Analysis of interatomic Contacts of Structural Units in PDB entry:
1GXM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GXM entry

There are 2 chains in PDB entry 1GXM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 326LEU 649
B
 GLY 318LEU 649
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1GXM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
336 346Right-handed alpha
Helix 2
2
A
350 352Right-handed 310
Helix 3
3
A
353 360Right-handed alpha
Helix 4
4
A
389 392Right-handed 310
Helix 5
5
A
393 408Right-handed alpha
Helix 6
6
A
409 427Right-handed alpha
Helix 7
7
A
441 446Right-handed 310
Helix 8
8
A
452 466Right-handed alpha
Helix 9
9
A
477 499Right-handed alpha
Helix 10
10
A
535 544Right-handed alpha
Helix 11
11
A
549 564Right-handed alpha
Helix 12
12
A
577 580Right-handed 310
Helix 13
13
A
617 621Right-handed 310
Helix 14
14
A
622 629Right-handed alpha
Helix 15
15
A
635 646Right-handed alpha
Helix 16
16
B
336 346Right-handed alpha
Helix 17
17
B
350 352Right-handed 310
Helix 18
18
B
353 360Right-handed alpha
Helix 19
19
B
389 392Right-handed 310
Helix 20
20
B
393 408Right-handed alpha
Helix 21
21
B
409 427Right-handed alpha
Helix 22
22
B
441 446Right-handed 310
Helix 23
23
B
452 466Right-handed alpha
Helix 24
24
B
477 499Right-handed alpha
Helix 25
25
B
535 545Right-handed alpha
Helix 26
26
B
549 564Right-handed alpha
Helix 27
27
B
577 580Right-handed 310
Helix 28
28
B
617 621Right-handed 310
Helix 29
29
B
622 629Right-handed alpha
Helix 30
30
B
635 646Right-handed alpha
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There are 11 sheets in PDB entry 1GXM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 387first strand
Strand 2
A
436 437anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 448first strand
Strand 2
A
512 513anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
501 502first strand
Strand 2
A
505 506anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 532first strand
Strand 2
A
597 598anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
570 575first strand
Strand 2
A
585 595anti-parallel
Strand 3
A
632 633anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
607 608first strand
Strand 2
A
614 615anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 387first strand
Strand 2
B
436 437anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
447 448first strand
Strand 2
B
512 513anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
501 502first strand
Strand 2
B
505 506anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
531 532first strand
Strand 2
B
597 598anti-parallel
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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
570 575first strand
Strand 2
B
585 595anti-parallel
Strand 3
B
632 633anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il