Analysis of interatomic Contacts of Structural Units in PDB entry:
1GYH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GYH entry

There are 4 chains in PDB entry 1GYH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 30LYS 347
B
ALA 31LYS 347
C
GLY 30LYS 347
D
ALA 31ALA 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 1GYH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
81 86Right-handed alpha
Helix 2
2
A
243 247Right-handed 310
Helix 3
3
A
271 274Right-handed 310
Helix 4
4
A
311 313Right-handed 310
Helix 5
5
A
336 341Right-handed alpha
Helix 6
6
B
81 86Right-handed alpha
Helix 7
7
B
243 247Right-handed 310
Helix 8
8
B
271 274Right-handed 310
Helix 9
9
B
311 313Right-handed 310
Helix 10
10
B
336 341Right-handed alpha
Helix 11
11
C
81 86Right-handed alpha
Helix 12
12
C
243 247Right-handed 310
Helix 13
13
C
271 274Right-handed 310
Helix 14
14
C
311 313Right-handed 310
Helix 15
15
C
336 341Right-handed alpha
Helix 16
16
D
81 86Right-handed alpha
Helix 17
17
D
243 247Right-handed 310
Helix 18
18
D
271 274Right-handed 310
Helix 19
19
D
311 313Right-handed 310
Helix 20
20
D
336 341Right-handed alpha
Helix 21
21
E
81 86Right-handed alpha
Helix 22
22
E
243 247Right-handed 310
Helix 23
23
E
271 274Right-handed 310
Helix 24
24
E
311 313Right-handed 310
Helix 25
25
E
336 341Right-handed alpha
Helix 26
26
F
81 86Right-handed alpha
Helix 27
27
F
243 247Right-handed 310
Helix 28
28
F
271 274Right-handed 310
Helix 29
29
F
311 313Right-handed 310
Helix 30
30
F
336 341Right-handed alpha
Back to top of page

There are 35 sheets in PDB entry 1GYH. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF, CA, CB, CC, CD, CE, A, DB, C, DD, DE, DF, EA, EB, EC, ED, EE, EF, FA, FB, FC, FD, FE, FF,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
40 44first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
58 62anti-parallel
Strand 4
A
67 73anti-parallel
Strand 5
A
344 345parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
54 55first strand
Strand 2
A
92 101anti-parallel
Strand 3
A
104 111anti-parallel
Strand 4
A
119 126anti-parallel
Strand 5
A
139 147anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
160 163first strand
Strand 2
A
169 173anti-parallel
Strand 3
A
180 184anti-parallel
Strand 4
A
198 202anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
220 228first strand
Strand 2
A
231 238anti-parallel
Strand 3
A
250 256anti-parallel
Strand 4
A
277 280anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
286 297first strand
Strand 2
A
300 309anti-parallel
Strand 3
A
316 322anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
324 325first strand
Strand 2
A
331 332anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
40 44first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
58 62anti-parallel
Strand 4
B
67 73anti-parallel
Strand 5
B
344 345parallel
Back to list of sheets
Back to top of page

There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
54 55first strand
Strand 2
B
92 101anti-parallel
Strand 3
B
104 111anti-parallel
Strand 4
B
119 126anti-parallel
Strand 5
B
139 147anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
160 163first strand
Strand 2
B
169 173anti-parallel
Strand 3
B
180 184anti-parallel
Strand 4
B
198 202anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
220 228first strand
Strand 2
B
231 238anti-parallel
Strand 3
B
250 256anti-parallel
Strand 4
B
277 280anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
286 297first strand
Strand 2
B
300 309anti-parallel
Strand 3
B
316 322anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
324 325first strand
Strand 2
B
331 332anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
40 44first strand
Strand 2
C
47 52anti-parallel
Strand 3
C
58 62anti-parallel
Strand 4
C
67 73anti-parallel
Strand 5
C
344 345parallel
Back to list of sheets
Back to top of page

There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
54 55first strand
Strand 2
C
92 101anti-parallel
Strand 3
C
104 111anti-parallel
Strand 4
C
119 126anti-parallel
Strand 5
C
139 147anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
160 163first strand
Strand 2
C
169 173anti-parallel
Strand 3
C
180 184anti-parallel
Strand 4
C
198 202anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
220 228first strand
Strand 2
C
231 238anti-parallel
Strand 3
C
250 256anti-parallel
Strand 4
C
277 280anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
286 297first strand
Strand 2
C
300 309anti-parallel
Strand 3
C
316 325anti-parallel
Strand 4
C
331 332anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
40 44first strand
Strand 2
D
47 52anti-parallel
Strand 3
D
58 62anti-parallel
Strand 4
D
67 73anti-parallel
Strand 5
D
344 345parallel
Back to list of sheets
Back to top of page

There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
54 55first strand
Strand 2
D
92 101anti-parallel
Strand 3
D
104 111anti-parallel
Strand 4
D
119 126anti-parallel
Strand 5
D
139 147anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
160 163first strand
Strand 2
D
169 173anti-parallel
Strand 3
D
180 184anti-parallel
Strand 4
D
198 202anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
220 228first strand
Strand 2
D
231 238anti-parallel
Strand 3
D
250 256anti-parallel
Strand 4
D
277 280anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
286 297first strand
Strand 2
D
300 309anti-parallel
Strand 3
D
316 322anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in DF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
324 325first strand
Strand 2
D
331 332anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
40 44first strand
Strand 2
E
47 52anti-parallel
Strand 3
E
58 62anti-parallel
Strand 4
E
67 73anti-parallel
Strand 5
E
344 345parallel
Back to list of sheets
Back to top of page

There are 5 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
54 55first strand
Strand 2
E
92 101anti-parallel
Strand 3
E
104 111anti-parallel
Strand 4
E
119 126anti-parallel
Strand 5
E
139 147anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
160 163first strand
Strand 2
E
169 173anti-parallel
Strand 3
E
180 184anti-parallel
Strand 4
E
198 202anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
220 228first strand
Strand 2
E
231 238anti-parallel
Strand 3
E
250 256anti-parallel
Strand 4
E
277 280anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
286 297first strand
Strand 2
E
300 309anti-parallel
Strand 3
E
316 322anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in EF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
324 325first strand
Strand 2
E
331 332anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
40 44first strand
Strand 2
F
47 52anti-parallel
Strand 3
F
58 62anti-parallel
Strand 4
F
67 73anti-parallel
Strand 5
F
344 345parallel
Back to list of sheets
Back to top of page

There are 5 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
54 55first strand
Strand 2
F
92 101anti-parallel
Strand 3
F
104 111anti-parallel
Strand 4
F
119 126anti-parallel
Strand 5
F
139 147anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
160 163first strand
Strand 2
F
169 173anti-parallel
Strand 3
F
180 184anti-parallel
Strand 4
F
198 202anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in FD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
220 228first strand
Strand 2
F
231 238anti-parallel
Strand 3
F
250 256anti-parallel
Strand 4
F
277 280anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in FE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
286 297first strand
Strand 2
F
300 309anti-parallel
Strand 3
F
316 322anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in FF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
324 325first strand
Strand 2
F
331 332anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il