Analysis of interatomic Contacts of Structural Units in PDB entry:
1GYL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GYL entry

There are 2 chains in PDB entry 1GYL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 359
B
 MET 1ASP 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1GYL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 16Right-handed alpha
Helix 2
2
A
20 25Right-handed alpha
Helix 3
3
A
33 38Right-handed alpha
Helix 4
4
A
42 44Right-handed 310
Helix 5
5
A
90 99Right-handed alpha
Helix 6
6
A
113 119Right-handed alpha
Helix 7
7
A
135 141Right-handed alpha
Helix 8
8
A
166 168Right-handed 310
Helix 9
9
A
203 205Right-handed 310
Helix 10
10
A
215 222Right-handed alpha
Helix 11
11
A
239 243Right-handed alpha
Helix 12
12
A
265 275Right-handed alpha
Helix 13
13
A
291 300Right-handed alpha
Helix 14
14
A
309 326Right-handed alpha
Helix 15
15
A
328 340Right-handed alpha
Helix 16
16
A
346 348Right-handed 310
Helix 17
17
B
6 15Right-handed 310
Helix 18
18
B
19 24Right-handed alpha
Helix 19
19
B
34 39Right-handed alpha
Helix 20
20
B
82 84Right-handed 310
Helix 21
21
B
95 98Right-handed alpha
Helix 22
22
B
167 169Right-handed 310
Helix 23
23
B
202 204Right-handed 310
Helix 24
24
B
217 220Right-handed alpha
Helix 25
25
B
235 238Right-handed alpha
Helix 26
26
B
240 243Right-handed alpha
Helix 27
27
B
267 273Right-handed 310
Helix 28
28
B
293 301Right-handed alpha
Helix 29
29
B
309 314Right-handed 310
Helix 30
30
B
319 340Right-handed alpha
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There are 2 sheets in PDB entry 1GYL. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
152 154parallel
Strand 3
A
227 229parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
250 252first strand
Strand 2
B
283 285parallel
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