Analysis of interatomic Contacts of Structural Units in PDB entry:
1GYN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GYN entry

There is 1 chain in PDB entry 1GYN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1LEU 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1GYN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 6Right-handed 310
Helix 2
2
A
14 27Right-handed alpha
Helix 3
3
A
38 53Right-handed alpha
Helix 4
4
A
61 70Right-handed alpha
Helix 5
5
A
79 97Right-handed alpha
Helix 6
6
A
98 101Right-handed 310
Helix 7
7
A
112 114Right-handed 310
Helix 8
8
A
115 134Right-handed alpha
Helix 9
9
A
149 166Right-handed alpha
Helix 10
10
A
198 211Right-handed alpha
Helix 11
11
A
238 253Right-handed alpha
Helix 12
12
A
270 280Right-handed alpha
Helix 13
13
A
288 306Right-handed alpha
Helix 14
14
A
307 310Right-handed 310
Helix 15
15
A
324 329Right-handed alpha
Helix 16
16
A
329 352Right-handed alpha
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There are 2 sheets in PDB entry 1GYN. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 11 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
103 108parallel
Strand 3
A
140 142parallel
Strand 4
A
170 175parallel
Strand 5
A
216 220parallel
Strand 6
A
261 263parallel
Strand 7
A
282 287parallel
Strand 8
A
31 35parallel
Strand 9
A
56 60parallel
Strand 10
A
103 108parallel
Strand 11
A
10 11parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 316first strand
Strand 2
A
319 323anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il