Analysis of interatomic Contacts of Structural Units in PDB entry:
1GYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GYP entry

There are 4 chains in PDB entry 1GYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1SER 358
B
 ALA 1SER 358
C
 ALA 1SER 358
D
 ALA 1SER 358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 58 helices in PDB entry 1GYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 23Right-handed alpha
Helix 2
2
A
43 51Right-handed alpha
Helix 3
3
A
94 96Right-handed 310
Helix 4
4
A
99 102Right-handed alpha
Helix 5
5
A
117 125Right-handed alpha
Helix 6
6
A
150 152Right-handed 310
Helix 7
7
A
166 180Right-handed alpha
Helix 8
8
A
212 214Right-handed 310
Helix 9
9
A
228 235Right-handed alpha
Helix 10
10
A
237 239Right-handed 310
Helix 11
11
A
270 282Right-handed alpha
Helix 12
12
A
298 300Right-handed 310
Helix 13
13
A
312 317Right-handed alpha
Helix 14
14
A
337 356Right-handed alpha
Helix 15
15
B
12 23Right-handed alpha
Helix 16
16
B
43 51Right-handed alpha
Helix 17
17
B
94 96Right-handed 310
Helix 18
18
B
99 102Right-handed alpha
Helix 19
19
B
117 126Right-handed alpha
Helix 20
20
B
150 152Right-handed 310
Helix 21
21
B
166 180Right-handed alpha
Helix 22
22
B
212 214Right-handed 310
Helix 23
23
B
217 219Right-handed 310
Helix 24
24
B
227 229Right-handed 310
Helix 25
25
B
231 235Right-handed alpha
Helix 26
26
B
237 239Right-handed 310
Helix 27
27
B
270 282Right-handed alpha
Helix 28
28
B
298 301Right-handed 310
Helix 29
29
B
312 317Right-handed alpha
Helix 30
30
B
337 357Right-handed alpha
Helix 31
31
C
12 23Right-handed alpha
Helix 32
32
C
43 51Right-handed alpha
Helix 33
33
C
94 96Right-handed 310
Helix 34
34
C
99 102Right-handed alpha
Helix 35
35
C
117 125Right-handed alpha
Helix 36
36
C
150 152Right-handed 310
Helix 37
37
C
166 180Right-handed alpha
Helix 38
38
C
212 214Right-handed 310
Helix 39
39
C
227 235Right-handed 310
Helix 40
40
C
237 239Right-handed 310
Helix 41
41
C
270 282Right-handed alpha
Helix 42
42
C
298 301Right-handed 310
Helix 43
43
C
312 317Right-handed alpha
Helix 44
44
C
337 356Right-handed alpha
Helix 45
45
D
12 23Right-handed alpha
Helix 46
46
D
43 51Right-handed alpha
Helix 47
47
D
94 96Right-handed 310
Helix 48
48
D
99 102Right-handed alpha
Helix 49
49
D
117 126Right-handed alpha
Helix 50
50
D
150 152Right-handed 310
Helix 51
51
D
166 180Right-handed alpha
Helix 52
52
D
212 214Right-handed 310
Helix 53
53
D
228 235Right-handed alpha
Helix 54
54
D
237 239Right-handed 310
Helix 55
55
D
270 282Right-handed alpha
Helix 56
56
D
298 300Right-handed 310
Helix 57
57
D
312 317Right-handed alpha
Helix 58
58
D
337 356Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 1GYP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 162first strand
Strand 2
A
130 133parallel
Strand 3
A
106 109parallel
Strand 4
A
3 8parallel
Strand 5
A
31 38parallel
Strand 6
A
83 89parallel
Strand 7
A
77 80anti-parallel
Strand 8
A
63 66anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 224first strand
Strand 2
A
243 250anti-parallel
Strand 3
A
185 195parallel
Strand 4
A
256 264anti-parallel
Strand 5
A
326 333anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
289 292first strand
Strand 2
A
308 311parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 162first strand
Strand 2
B
130 133parallel
Strand 3
B
106 109parallel
Strand 4
B
3 8parallel
Strand 5
B
31 38parallel
Strand 6
B
83 89parallel
Strand 7
B
77 80anti-parallel
Strand 8
B
63 66anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 224first strand
Strand 2
B
243 250anti-parallel
Strand 3
B
187 195parallel
Strand 4
B
256 263anti-parallel
Strand 5
B
326 333anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 292first strand
Strand 2
B
308 311parallel
Back to list of sheets
Back to top of page

There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 162first strand
Strand 2
C
130 133parallel
Strand 3
C
106 109parallel
Strand 4
C
3 8parallel
Strand 5
C
31 38parallel
Strand 6
C
84 89parallel
Strand 7
C
77 80anti-parallel
Strand 8
C
63 66anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
222 225first strand
Strand 2
C
243 250anti-parallel
Strand 3
C
185 195parallel
Strand 4
C
256 264anti-parallel
Strand 5
C
326 333anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
289 292first strand
Strand 2
C
308 311parallel
Back to list of sheets
Back to top of page

There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
160 162first strand
Strand 2
D
130 133parallel
Strand 3
D
106 109parallel
Strand 4
D
3 8parallel
Strand 5
D
31 38parallel
Strand 6
D
83 89parallel
Strand 7
D
77 80anti-parallel
Strand 8
D
63 66anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
326 333first strand
Strand 2
D
256 263anti-parallel
Strand 3
D
188 195anti-parallel
Strand 4
D
243 250parallel
Strand 5
D
222 225anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
289 292first strand
Strand 2
D
308 311parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il