Analysis of interatomic Contacts of Structural Units in PDB entry:
1GZD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GZD entry

There is 1 chain in PDB entry 1GZD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ALA 554
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 1GZD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1 5Right-handed 310
Helix 2
2
A
6 20Right-handed alpha
Helix 3
3
A
21 23Right-handed 310
Helix 4
4
A
24 32Right-handed alpha
Helix 5
5
A
34 39Right-handed alpha
Helix 6
6
A
60 74Right-handed alpha
Helix 7
7
A
75 86Right-handed alpha
Helix 8
8
A
98 103Right-handed alpha
Helix 9
9
A
117 138Right-handed alpha
Helix 10
10
A
157 170Right-handed alpha
Helix 11
11
A
171 175Right-handed 310
Helix 12
12
A
187 196Right-handed alpha
Helix 13
13
A
199 201Right-handed 310
Helix 14
14
A
214 233Right-handed alpha
Helix 15
15
A
234 240Right-handed 310
Helix 16
16
A
248 255Right-handed alpha
Helix 17
17
A
258 260Right-handed 310
Helix 18
18
A
270 274Right-handed 310
Helix 19
19
A
277 279Right-handed 310
Helix 20
20
A
280 288Right-handed alpha
Helix 21
21
A
288 309Right-handed alpha
Helix 22
22
A
310 313Right-handed 310
Helix 23
23
A
314 329Right-handed alpha
Helix 24
24
A
341 345Right-handed 310
Helix 25
25
A
346 360Right-handed alpha
Helix 26
26
A
384 389Right-handed 310
Helix 27
27
A
390 397Right-handed alpha
Helix 28
28
A
414 438Right-handed alpha
Helix 29
29
A
440 451Right-handed alpha
Helix 30
30
A
454 459Right-handed alpha
Helix 31
31
A
461 466Right-handed 310
Helix 32
32
A
482 505Right-handed alpha
Helix 33
33
A
511 513Right-handed 310
Helix 34
34
A
514 528Right-handed alpha
Helix 35
35
A
538 554Right-handed alpha
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There are 3 sheets in PDB entry 1GZD. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 44first strand
Strand 2
A
49 53anti-parallel
Strand 3
A
473 480anti-parallel
Strand 4
A
403 410parallel
Strand 5
A
334 339parallel
Strand 6
A
377 379parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
115 116anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 183first strand
Strand 2
A
150 154parallel
Strand 3
A
203 208parallel
Strand 4
A
242 246parallel
Strand 5
A
262 264parallel
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