Analysis of interatomic Contacts of Structural Units in PDB entry:
1GZE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GZE entry

There are 4 chains in PDB entry 1GZE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 41ALA 247
B
 ASN 44THR 246
C
 TYR 42LYS 251
D
 ASN 44THR 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 1GZE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 65Right-handed alpha
Helix 2
2
A
69 81Right-handed alpha
Helix 3
3
A
82 93Right-handed alpha
Helix 4
4
A
101 115Right-handed alpha
Helix 5
5
A
131 135Right-handed 310
Helix 6
6
A
151 163Right-handed alpha
Helix 7
7
B
51 64Right-handed alpha
Helix 8
8
B
69 82Right-handed alpha
Helix 9
9
B
83 92Right-handed alpha
Helix 10
10
B
101 115Right-handed alpha
Helix 11
11
B
131 135Right-handed 310
Helix 12
12
B
136 141Right-handed alpha
Helix 13
13
B
151 163Right-handed alpha
Helix 14
14
B
204 207Right-handed 310
Helix 15
15
C
51 67Right-handed alpha
Helix 16
16
C
69 82Right-handed alpha
Helix 17
17
C
82 93Right-handed alpha
Helix 18
18
C
101 115Right-handed alpha
Helix 19
19
C
131 135Right-handed 310
Helix 20
20
C
151 163Right-handed alpha
Helix 21
21
C
203 207Right-handed 310
Helix 22
22
D
51 64Right-handed alpha
Helix 23
23
D
69 82Right-handed alpha
Helix 24
24
D
82 93Right-handed alpha
Helix 25
25
D
101 114Right-handed alpha
Helix 26
26
D
115 117Right-handed 310
Helix 27
27
D
131 135Right-handed 310
Helix 28
28
D
136 141Right-handed alpha
Helix 29
29
D
151 163Right-handed alpha
Helix 30
30
D
204 207Right-handed 310
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There are 7 sheets in PDB entry 1GZE. Click on sheet of interest to get list of strands forming it: AA, AB, BA, CA, CB, A, DB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 130first strand
Strand 2
A
188 194anti-parallel
Strand 3
A
237 246parallel
Strand 4
A
221 230anti-parallel
Strand 5
A
165 168anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
214 216anti-parallel
Strand 3
A
201 202anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 130first strand
Strand 2
B
188 194anti-parallel
Strand 3
B
237 245parallel
Strand 4
B
214 227anti-parallel
Strand 5
B
166 176anti-parallel
Strand 6
B
124 130anti-parallel
Strand 7
B
124 130first strand
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 130first strand
Strand 2
C
188 194anti-parallel
Strand 3
C
237 246parallel
Strand 4
C
221 229anti-parallel
Strand 5
C
166 169anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
173 176first strand
Strand 2
C
214 217anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 130first strand
Strand 2
D
188 194anti-parallel
Strand 3
D
237 243parallel
Strand 4
D
221 230anti-parallel
Strand 5
D
166 169anti-parallel
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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
173 176first strand
Strand 2
D
214 217anti-parallel
Strand 3
D
201 202anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il