Analysis of interatomic Contacts of Structural Units in PDB entry:
1GZF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GZF entry

There are 4 chains in PDB entry 1GZF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 45ALA 247
B
 ALA 41LYS 251
C
 ASN 44LYS 251
D
 ASN 44THR 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 1GZF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
51 67Right-handed alpha
Helix 2
2
A
69 93Right-handed alpha
Helix 3
3
A
101 115Right-handed alpha
Helix 4
4
A
131 136Right-handed 310
Helix 5
5
A
136 140Right-handed 310
Helix 6
6
A
151 163Right-handed alpha
Helix 7
7
A
180 185Right-handed alpha
Helix 8
8
A
204 207Right-handed 310
Helix 9
9
B
51 67Right-handed alpha
Helix 10
10
B
69 82Right-handed alpha
Helix 11
11
B
82 93Right-handed alpha
Helix 12
12
B
101 115Right-handed alpha
Helix 13
13
B
131 135Right-handed 310
Helix 14
14
B
136 141Right-handed alpha
Helix 15
15
B
151 163Right-handed alpha
Helix 16
16
B
180 185Right-handed alpha
Helix 17
17
C
51 67Right-handed alpha
Helix 18
18
C
69 93Right-handed alpha
Helix 19
19
C
101 115Right-handed alpha
Helix 20
20
C
131 136Right-handed 310
Helix 21
21
C
151 163Right-handed alpha
Helix 22
22
C
180 185Right-handed alpha
Helix 23
23
D
51 67Right-handed alpha
Helix 24
24
D
69 93Right-handed alpha
Helix 25
25
D
101 115Right-handed alpha
Helix 26
26
D
131 135Right-handed 310
Helix 27
27
D
136 141Right-handed alpha
Helix 28
28
D
151 163Right-handed alpha
Helix 29
29
D
180 185Right-handed alpha
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There are 9 sheets in PDB entry 1GZF. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, BC, CA, CB, A, DB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 130first strand
Strand 2
A
188 194anti-parallel
Strand 3
A
237 243parallel
Strand 4
A
221 230anti-parallel
Strand 5
A
166 169anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 176first strand
Strand 2
A
214 217anti-parallel
Strand 3
A
201 202anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 43first strand
Strand 2
B
46 47anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 130first strand
Strand 2
B
188 194anti-parallel
Strand 3
B
237 245parallel
Strand 4
B
221 230anti-parallel
Strand 5
B
166 169anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
173 176first strand
Strand 2
B
214 217anti-parallel
Strand 3
B
201 202anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
124 130first strand
Strand 2
C
188 194anti-parallel
Strand 3
C
237 246parallel
Strand 4
C
221 230anti-parallel
Strand 5
C
166 169anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
173 176first strand
Strand 2
C
214 217anti-parallel
Strand 3
C
201 202anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
124 130first strand
Strand 2
D
188 194anti-parallel
Strand 3
D
237 243parallel
Strand 4
D
221 230anti-parallel
Strand 5
D
166 169anti-parallel
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There are 3 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
173 176first strand
Strand 2
D
214 217anti-parallel
Strand 3
D
201 202anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il