Analysis of interatomic Contacts of Structural Units in PDB entry:
1GZM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1GZM entry

There are 2 chains in PDB entry 1GZM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 332
B
 MET 1GLU 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1GZM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
33 65Right-handed alpha
Helix 2
2
A
70 90Right-handed alpha
Helix 3
3
A
90 101Right-handed alpha
Helix 4
4
A
105 141Right-handed alpha
Helix 5
5
A
149 169Right-handed alpha
Helix 6
6
A
170 173Right-handed 310
Helix 7
7
A
195 198Right-handed 310
Helix 8
8
A
199 211Right-handed alpha
Helix 9
9
A
212 233Right-handed alpha
Helix 10
10
A
240 277Right-handed alpha
Helix 11
11
A
285 295Right-handed alpha
Helix 12
12
A
300 310Right-handed alpha
Helix 13
13
A
310 321Right-handed alpha
Helix 14
14
B
33 65Right-handed alpha
Helix 15
15
B
70 90Right-handed alpha
Helix 16
16
B
90 101Right-handed alpha
Helix 17
17
B
105 141Right-handed alpha
Helix 18
18
B
149 169Right-handed alpha
Helix 19
19
B
170 173Right-handed 310
Helix 20
20
B
195 198Right-handed 310
Helix 21
21
B
199 211Right-handed alpha
Helix 22
22
B
212 230Right-handed alpha
Helix 23
23
B
240 277Right-handed alpha
Helix 24
24
B
285 295Right-handed alpha
Helix 25
25
B
300 310Right-handed alpha
Helix 26
26
B
310 321Right-handed alpha
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There are 4 sheets in PDB entry 1GZM. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 6first strand
Strand 2
A
9 11anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 180first strand
Strand 2
A
187 189anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
9 11anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 180first strand
Strand 2
B
187 189anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il