Analysis of interatomic Contacts of Structural Units in PDB entry:
1H13


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1H13 entry

There is 1 chain in PDB entry 1H13 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PHE 404
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1H13. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 15Right-handed alpha
Helix 2
2
A
19 24Right-handed alpha
Helix 3
3
A
28 41Right-handed alpha
Helix 4
4
A
77 90Right-handed alpha
Helix 5
5
A
92 107Right-handed alpha
Helix 6
6
A
115 119Right-handed 310
Helix 7
7
A
142 161Right-handed alpha
Helix 8
8
A
167 183Right-handed alpha
Helix 9
9
A
200 204Right-handed 310
Helix 10
10
A
205 216Right-handed alpha
Helix 11
11
A
218 244Right-handed alpha
Helix 12
12
A
283 297Right-handed alpha
Helix 13
13
A
299 319Right-handed alpha
Helix 14
14
A
341 352Right-handed alpha
Helix 15
15
A
353 355Right-handed 310
Helix 16
16
A
357 370Right-handed alpha
Helix 17
17
A
378 393Right-handed alpha
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There are 3 sheets in PDB entry 1H13. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 55first strand
Strand 2
A
58 66anti-parallel
Strand 3
A
74 76anti-parallel
Strand 4
A
125 128anti-parallel
Strand 5
A
134 138anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
184 185first strand
Strand 2
A
188 189anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 278first strand
Strand 2
A
329 330anti-parallel
Strand 3
A
333 334anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il