Analysis of interatomic Contacts of Structural Units in PDB entry:
1H38

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1H38 entry

There are 16 chains in PDB entry 1H38 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 2	ALA 883
B	ASN 2	ALA 883
C	ASN 2	ALA 883
D	ASN 2	ALA 883
E	G 2	C 18
F	G 1	U 8
G	G 1	C 9
H	G 1	C 18
I	G 1	U 8
J	G 1	C 9
K	G 2	C 18
L	G 1	U 8
M	G 1	C 9
N	G 2	C 18
O	G 1	U 8
P	G 1	C 9

There are148 helices in PDB entry 1H38. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	8	13	Right-handed alpha
Helix 2	2	A	21	29	Right-handed alpha
Helix 3	3	A	29	61	Right-handed alpha
Helix 4	4	A	70	94	Right-handed alpha
Helix 5	5	A	100	107	Right-handed alpha
Helix 6	6	A	110	127	Right-handed alpha
Helix 7	7	A	133	157	Right-handed alpha
Helix 8	8	A	163	173	Right-handed alpha
Helix 9	9	A	175	193	Right-handed alpha
Helix 10	10	A	205	224	Right-handed alpha
Helix 11	11	A	247	263	Right-handed alpha
Helix 12	12	A	301	307	Right-handed alpha
Helix 13	13	A	313	325	Right-handed alpha
Helix 14	14	A	331	342	Right-handed alpha
Helix 15	15	A	373	409	Right-handed alpha
Helix 16	16	A	437	443	Right-handed alpha
Helix 17	17	A	452	468	Right-handed alpha
Helix 18	18	A	474	485	Right-handed alpha
Helix 19	19	A	485	495	Right-handed alpha
Helix 20	20	A	499	505	Right-handed 310
Helix 21	21	A	507	525	Right-handed alpha
Helix 22	22	A	540	550	Right-handed alpha
Helix 23	23	A	552	559	Right-handed alpha
Helix 24	24	A	569	588	Right-handed alpha
Helix 25	25	A	612	624	Right-handed alpha
Helix 26	26	A	626	636	Right-handed alpha
Helix 27	27	A	637	640	Right-handed 310
Helix 28	28	A	642	654	Right-handed alpha
Helix 29	29	A	654	661	Right-handed alpha
Helix 30	30	A	669	686	Right-handed alpha
Helix 31	31	A	689	707	Right-handed alpha
Helix 32	32	A	770	801	Right-handed alpha
Helix 33	33	A	817	839	Right-handed alpha
Helix 34	34	A	840	851	Right-handed alpha
Helix 35	35	A	854	858	Right-handed 310
Helix 36	36	A	871	878	Right-handed 310
Helix 37	37	B	8	13	Right-handed alpha
Helix 38	38	B	21	29	Right-handed alpha
Helix 39	39	B	29	61	Right-handed alpha
Helix 40	40	B	62	66	Right-handed 310
Helix 41	41	B	70	94	Right-handed alpha
Helix 42	42	B	100	107	Right-handed alpha
Helix 43	43	B	110	127	Right-handed alpha
Helix 44	44	B	133	157	Right-handed alpha
Helix 45	45	B	163	173	Right-handed alpha
Helix 46	46	B	175	193	Right-handed alpha
Helix 47	47	B	205	224	Right-handed alpha
Helix 48	48	B	247	262	Right-handed alpha
Helix 49	49	B	301	307	Right-handed alpha
Helix 50	50	B	313	325	Right-handed alpha
Helix 51	51	B	331	342	Right-handed alpha
Helix 52	52	B	373	409	Right-handed alpha
Helix 53	53	B	437	443	Right-handed alpha
Helix 54	54	B	452	468	Right-handed alpha
Helix 55	55	B	474	485	Right-handed alpha
Helix 56	56	B	485	495	Right-handed alpha
Helix 57	57	B	500	505	Right-handed 310
Helix 58	58	B	507	525	Right-handed alpha
Helix 59	59	B	540	550	Right-handed alpha
Helix 60	60	B	552	559	Right-handed alpha
Helix 61	61	B	569	588	Right-handed alpha
Helix 62	62	B	612	624	Right-handed alpha
Helix 63	63	B	626	636	Right-handed alpha
Helix 64	64	B	637	640	Right-handed 310
Helix 65	65	B	642	654	Right-handed alpha
Helix 66	66	B	654	661	Right-handed alpha
Helix 67	67	B	669	686	Right-handed alpha
Helix 68	68	B	689	707	Right-handed alpha
Helix 69	69	B	770	777	Right-handed alpha
Helix 70	70	B	777	801	Right-handed alpha
Helix 71	71	B	817	839	Right-handed alpha
Helix 72	72	B	840	851	Right-handed alpha
Helix 73	73	B	854	858	Right-handed 310
Helix 74	74	B	871	878	Right-handed 310
Helix 75	75	C	8	13	Right-handed alpha
Helix 76	76	C	21	29	Right-handed alpha
Helix 77	77	C	29	61	Right-handed alpha
Helix 78	78	C	62	66	Right-handed 310
Helix 79	79	C	70	94	Right-handed alpha
Helix 80	80	C	100	107	Right-handed alpha
Helix 81	81	C	110	127	Right-handed alpha
Helix 82	82	C	133	157	Right-handed alpha
Helix 83	83	C	163	173	Right-handed alpha
Helix 84	84	C	175	193	Right-handed alpha
Helix 85	85	C	205	224	Right-handed alpha
Helix 86	86	C	247	263	Right-handed alpha
Helix 87	87	C	301	307	Right-handed alpha
Helix 88	88	C	313	325	Right-handed alpha
Helix 89	89	C	331	342	Right-handed alpha
Helix 90	90	C	373	409	Right-handed alpha
Helix 91	91	C	437	443	Right-handed alpha
Helix 92	92	C	452	468	Right-handed alpha
Helix 93	93	C	474	485	Right-handed alpha
Helix 94	94	C	485	495	Right-handed alpha
Helix 95	95	C	500	505	Right-handed 310
Helix 96	96	C	507	525	Right-handed alpha
Helix 97	97	C	540	550	Right-handed alpha
Helix 98	98	C	552	559	Right-handed alpha
Helix 99	99	C	569	588	Right-handed alpha
Helix 100	100	C	612	624	Right-handed alpha
Helix 101	101	C	626	636	Right-handed alpha
Helix 102	102	C	637	640	Right-handed 310
Helix 103	103	C	642	654	Right-handed alpha
Helix 104	104	C	654	661	Right-handed alpha
Helix 105	105	C	669	686	Right-handed alpha
Helix 106	106	C	689	707	Right-handed alpha
Helix 107	107	C	770	801	Right-handed alpha
Helix 108	108	C	817	839	Right-handed alpha
Helix 109	109	C	840	851	Right-handed alpha
Helix 110	110	C	854	858	Right-handed 310
Helix 111	111	C	871	878	Right-handed 310
Helix 112	112	D	8	13	Right-handed alpha
Helix 113	113	D	21	29	Right-handed alpha
Helix 114	114	D	29	61	Right-handed alpha
Helix 115	115	D	62	66	Right-handed 310
Helix 116	116	D	70	94	Right-handed alpha
Helix 117	117	D	100	107	Right-handed alpha
Helix 118	118	D	110	127	Right-handed alpha
Helix 119	119	D	133	157	Right-handed alpha
Helix 120	120	D	163	173	Right-handed alpha
Helix 121	121	D	175	193	Right-handed alpha
Helix 122	122	D	205	224	Right-handed alpha
Helix 123	123	D	247	263	Right-handed alpha
Helix 124	124	D	301	307	Right-handed alpha
Helix 125	125	D	313	325	Right-handed alpha
Helix 126	126	D	331	342	Right-handed alpha
Helix 127	127	D	373	408	Right-handed alpha
Helix 128	128	D	437	443	Right-handed alpha
Helix 129	129	D	452	468	Right-handed alpha
Helix 130	130	D	474	485	Right-handed alpha
Helix 131	131	D	485	495	Right-handed alpha
Helix 132	132	D	500	505	Right-handed 310
Helix 133	133	D	507	525	Right-handed alpha
Helix 134	134	D	540	550	Right-handed alpha
Helix 135	135	D	552	559	Right-handed alpha
Helix 136	136	D	569	588	Right-handed alpha
Helix 137	137	D	612	624	Right-handed alpha
Helix 138	138	D	626	636	Right-handed alpha
Helix 139	139	D	637	640	Right-handed 310
Helix 140	140	D	642	654	Right-handed alpha
Helix 141	141	D	654	661	Right-handed alpha
Helix 142	142	D	669	686	Right-handed alpha
Helix 143	143	D	689	707	Right-handed alpha
Helix 144	144	D	770	801	Right-handed alpha
Helix 145	145	D	817	839	Right-handed alpha
Helix 146	146	D	840	851	Right-handed alpha
Helix 147	147	D	854	858	Right-handed 310
Helix 148	148	D	871	878	Right-handed 310

There are 36 sheets in PDB entry 1H38. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, BA, BB, BC, BD, BE, BF, BG, BH, BI, CA, CB, CC, CD, CE, CF, CG, CH, CI, A, DB, C, DD, DE, DF, G, DH, DI,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	228	first strand
Strand 2	A	245	246	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	232	first strand
Strand 2	A	241	242	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	298	first strand
Strand 2	A	418	421	parallel
Strand 3	A	426	428	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	330	first strand
Strand 2	A	444	446	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	451	first strand
Strand 2	A	529	530	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	534	537	first strand
Strand 2	A	813	816	anti-parallel
Strand 3	A	808	809	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	593	598	first strand
Strand 2	A	605	610	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	725	728	first strand
Strand 2	A	734	737	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	740	742	first strand
Strand 2	A	767	769	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	228	first strand
Strand 2	B	245	246	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	232	first strand
Strand 2	B	241	242	anti-parallel

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	298	first strand
Strand 2	B	418	421	parallel
Strand 3	B	426	428	anti-parallel

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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	328	330	first strand
Strand 2	B	444	446	anti-parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	451	first strand
Strand 2	B	529	530	anti-parallel

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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	534	537	first strand
Strand 2	B	813	816	anti-parallel
Strand 3	B	808	809	anti-parallel

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There are 2 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	593	598	first strand
Strand 2	B	605	610	anti-parallel

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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	725	728	first strand
Strand 2	B	734	737	anti-parallel

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There are 2 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	740	742	first strand
Strand 2	B	767	769	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	228	first strand
Strand 2	C	245	246	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	232	first strand
Strand 2	C	241	242	anti-parallel

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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	297	298	first strand
Strand 2	C	418	421	parallel
Strand 3	C	426	428	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	330	first strand
Strand 2	C	444	446	anti-parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	450	451	first strand
Strand 2	C	529	530	anti-parallel

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There are 3 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	534	537	first strand
Strand 2	C	813	816	anti-parallel
Strand 3	C	808	809	anti-parallel

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There are 2 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	593	598	first strand
Strand 2	C	605	610	anti-parallel

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There are 2 strands in CH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	725	728	first strand
Strand 2	C	734	737	anti-parallel

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There are 2 strands in CI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	740	742	first strand
Strand 2	C	767	769	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	228	first strand
Strand 2	D	245	246	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	232	first strand
Strand 2	D	241	242	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	297	298	first strand
Strand 2	D	418	421	parallel
Strand 3	D	426	428	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	330	first strand
Strand 2	D	444	446	anti-parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	450	451	first strand
Strand 2	D	529	530	anti-parallel

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There are 3 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	534	537	first strand
Strand 2	D	813	816	anti-parallel
Strand 3	D	808	809	anti-parallel

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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	594	598	first strand
Strand 2	D	605	609	anti-parallel

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There are 2 strands in DH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	725	728	first strand
Strand 2	D	734	737	anti-parallel

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There are 2 strands in DI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	740	742	first strand
Strand 2	D	767	769	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1H38

Analysis of interatomic Contacts of Structural Units in PDB entry:
1H38