Analysis of interatomic Contacts of Structural Units in PDB entry:
1H3D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1H3D entry

There is 1 chain in PDB entry 1H3D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5GLU 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1H3D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 28Right-handed alpha
Helix 2
2
A
54 56Right-handed 310
Helix 3
3
A
57 64Right-handed alpha
Helix 4
4
A
74 87Right-handed alpha
Helix 5
5
A
118 123Right-handed 310
Helix 6
6
A
131 143Right-handed alpha
Helix 7
7
A
154 158Right-handed 310
Helix 8
8
A
158 162Right-handed 310
Helix 9
9
A
174 180Right-handed alpha
Helix 10
10
A
203 226Right-handed alpha
Helix 11
11
A
237 245Right-handed alpha
Helix 12
12
A
274 284Right-handed alpha
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There are 3 sheets in PDB entry 1H3D. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
48 53anti-parallel
Strand 3
A
7 12parallel
Strand 4
A
69 73parallel
Strand 5
A
193 198anti-parallel
Strand 6
A
93 98anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 150first strand
Strand 2
A
126 129parallel
Strand 3
A
166 171parallel
Strand 4
A
104 111anti-parallel
Strand 5
A
182 191anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 269first strand
Strand 2
A
227 230anti-parallel
Strand 3
A
290 292anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il