Analysis of interatomic Contacts of Structural Units in PDB entry:
1H3J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1H3J entry

There are 2 chains in PDB entry 1H3J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8PRO 343
B
 SER 8PRO 343
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 1H3J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 21Right-handed 310
Helix 2
AA2
A
22 35Right-handed alpha
Helix 3
AA3
A
43 58Right-handed alpha
Helix 4
AA4
A
61 67Right-handed alpha
Helix 5
AA5
A
77 82Right-handed alpha
Helix 6
AA6
A
82 87Right-handed alpha
Helix 7
AA7
A
88 93Right-handed 310
Helix 8
AA8
A
95 110Right-handed alpha
Helix 9
AA9
A
112 127Right-handed alpha
Helix 10
AB1
A
158 170Right-handed alpha
Helix 11
AB2
A
172 180Right-handed alpha
Helix 12
AB3
A
181 185Right-handed 310
Helix 13
AB4
A
192 196Right-handed 310
Helix 14
AB5
A
209 215Right-handed alpha
Helix 15
AB6
A
243 251Right-handed alpha
Helix 16
AB7
A
254 261Right-handed alpha
Helix 17
AB8
A
264 280Right-handed alpha
Helix 18
AB9
A
285 289Right-handed 310
Helix 19
AC1
A
293 296Right-handed 310
Helix 20
AC2
A
313 317Right-handed 310
Helix 21
AC3
B
19 21Right-handed 310
Helix 22
AC4
B
22 35Right-handed alpha
Helix 23
AC5
B
43 58Right-handed alpha
Helix 24
AC6
B
61 66Right-handed alpha
Helix 25
AC7
B
77 82Right-handed alpha
Helix 26
AC8
B
82 87Right-handed alpha
Helix 27
AC9
B
88 93Right-handed 310
Helix 28
AD1
B
95 110Right-handed alpha
Helix 29
AD2
B
112 126Right-handed alpha
Helix 30
AD3
B
158 170Right-handed alpha
Helix 31
AD4
B
172 180Right-handed alpha
Helix 32
AD5
B
181 185Right-handed 310
Helix 33
AD6
B
192 196Right-handed 310
Helix 34
AD7
B
209 215Right-handed alpha
Helix 35
AD8
B
243 251Right-handed alpha
Helix 36
AD9
B
254 261Right-handed alpha
Helix 37
AE1
B
264 280Right-handed alpha
Helix 38
AE2
B
285 289Right-handed 310
Helix 39
AE3
B
293 296Right-handed 310
Helix 40
AE4
B
313 317Right-handed 310
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There are 10 sheets in PDB entry 1H3J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
16 17anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
290 291anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
198 199anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 232first strand
Strand 2
A
241 242anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
330 331parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
16 17anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 138first strand
Strand 2
B
290 291anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
198 199anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
231 232first strand
Strand 2
B
241 242anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 308first strand
Strand 2
B
330 331parallel
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