Analysis of interatomic Contacts of Structural Units in PDB entry:
1H3K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1H3K entry

There is 1 chain in PDB entry 1H3K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 241THR 569
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 1H3K. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
258 268Right-handed alpha
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There are 4 sheets in PDB entry 1H3K. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 11 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 244first strand
Strand 2
A
275 277parallel
Strand 3
A
299 301parallel
Strand 4
A
325 326parallel
Strand 5
A
354 356parallel
Strand 6
A
377 379parallel
Strand 7
A
391 403parallel
Strand 8
A
365 370parallel
Strand 9
A
343 351parallel
Strand 10
A
315 322parallel
Strand 11
A
289 291parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
242 244first strand
Strand 2
A
275 277parallel
Strand 3
A
299 301parallel
Strand 4
A
325 326parallel
Strand 5
A
354 356parallel
Strand 6
A
377 379parallel
Strand 7
A
391 403parallel
Strand 8
A
415 425parallel
Strand 9
A
448 459parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 283first strand
Strand 2
A
304 306parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 441first strand
Strand 2
A
465 469parallel
Strand 3
A
499 502parallel
Strand 4
A
534 536parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il