Analysis of interatomic Contacts of Structural Units in PDB entry:
1H3W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1H3W entry

There is 1 chain in PDB entry 1H3W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
M
 PRO 238LEU 443
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 1H3W. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
M
246 251Right-handed alpha
Helix 2
2
M
309 315Right-handed alpha
Helix 3
3
M
414 420Right-handed alpha
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There are 5 sheets in PDB entry 1H3W. Click on sheet of interest to get list of strands forming it: MA, MB, MC, MD, ME,

There are 4 strands in MA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
239 243first strand
Strand 2
M
258 266anti-parallel
Strand 3
M
300 307anti-parallel
Strand 4
M
290 292anti-parallel
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There are 4 strands in MB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
282 283first strand
Strand 2
M
274 279anti-parallel
Strand 3
M
319 324anti-parallel
Strand 4
M
332 336anti-parallel
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There are 4 strands in MC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
347 351first strand
Strand 2
M
362 372anti-parallel
Strand 3
M
404 413anti-parallel
Strand 4
M
391 393anti-parallel
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There are 4 strands in MD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
347 351first strand
Strand 2
M
362 372anti-parallel
Strand 3
M
404 413anti-parallel
Strand 4
M
397 398anti-parallel
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There are 3 strands in ME sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
377 382first strand
Strand 2
M
422 429anti-parallel
Strand 3
M
437 442anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il