Analysis of interatomic Contacts of Structural Units in PDB entry:
1H4J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1H4J entry

There are 8 chains in PDB entry 1H4J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 1	LYS 595
B	TYR 1	SER 72
C	ASN 1	LYS 595
D	TYR 1	SER 72
E	ASN 1	LYS 595
F	TYR 1	SER 72
G	ASN 1	LYS 595
H	TYR 1	SER 72

There are 76 helices in PDB entry 1H4J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	1	8	Right-handed alpha
Helix 2	2	A	36	38	Right-handed 310
Helix 3	3	A	95	102	Right-handed 310
Helix 4	4	A	151	155	Right-handed 310
Helix 5	5	A	175	179	Right-handed 310
Helix 6	6	A	203	208	Right-handed alpha
Helix 7	7	A	217	221	Right-handed 310
Helix 8	8	A	224	229	Right-handed alpha
Helix 9	9	A	231	238	Right-handed 310
Helix 10	10	A	266	270	Right-handed 310
Helix 11	11	A	372	375	Right-handed 310
Helix 12	12	A	538	547	Right-handed alpha
Helix 13	13	A	554	556	Right-handed 310
Helix 14	14	A	557	562	Right-handed alpha
Helix 15	15	A	564	568	Right-handed 310
Helix 16	16	A	584	588	Right-handed 310
Helix 17	17	B	33	38	Right-handed alpha
Helix 18	18	B	38	62	Right-handed alpha
Helix 19	19	B	67	71	Right-handed 310
Helix 20	20	C	1	8	Right-handed alpha
Helix 21	21	C	36	38	Right-handed 310
Helix 22	22	C	95	102	Right-handed 310
Helix 23	23	C	151	155	Right-handed 310
Helix 24	24	C	175	179	Right-handed 310
Helix 25	25	C	203	208	Right-handed alpha
Helix 26	26	C	217	221	Right-handed 310
Helix 27	27	C	224	229	Right-handed alpha
Helix 28	28	C	231	238	Right-handed 310
Helix 29	29	C	266	270	Right-handed 310
Helix 30	30	C	372	375	Right-handed 310
Helix 31	31	C	538	547	Right-handed alpha
Helix 32	32	C	554	556	Right-handed 310
Helix 33	33	C	557	562	Right-handed alpha
Helix 34	34	C	564	568	Right-handed 310
Helix 35	35	C	584	588	Right-handed 310
Helix 36	36	D	33	38	Right-handed alpha
Helix 37	37	D	38	62	Right-handed alpha
Helix 38	38	D	67	71	Right-handed 310
Helix 39	39	E	1	8	Right-handed alpha
Helix 40	40	E	36	38	Right-handed 310
Helix 41	41	E	95	102	Right-handed 310
Helix 42	42	E	151	155	Right-handed 310
Helix 43	43	E	175	179	Right-handed 310
Helix 44	44	E	203	208	Right-handed alpha
Helix 45	45	E	217	221	Right-handed 310
Helix 46	46	E	224	229	Right-handed alpha
Helix 47	47	E	231	238	Right-handed 310
Helix 48	48	E	266	270	Right-handed 310
Helix 49	49	E	372	375	Right-handed 310
Helix 50	50	E	538	547	Right-handed alpha
Helix 51	51	E	554	556	Right-handed 310
Helix 52	52	E	557	562	Right-handed alpha
Helix 53	53	E	564	568	Right-handed 310
Helix 54	54	E	584	588	Right-handed 310
Helix 55	55	F	33	38	Right-handed alpha
Helix 56	56	F	38	62	Right-handed alpha
Helix 57	57	F	67	71	Right-handed 310
Helix 58	58	G	1	8	Right-handed alpha
Helix 59	59	G	36	38	Right-handed 310
Helix 60	60	G	95	102	Right-handed 310
Helix 61	61	G	151	155	Right-handed 310
Helix 62	62	G	175	179	Right-handed 310
Helix 63	63	G	203	208	Right-handed alpha
Helix 64	64	G	217	221	Right-handed 310
Helix 65	65	G	224	229	Right-handed alpha
Helix 66	66	G	231	238	Right-handed 310
Helix 67	67	G	266	270	Right-handed 310
Helix 68	68	G	372	375	Right-handed 310
Helix 69	69	G	538	547	Right-handed alpha
Helix 70	70	G	554	556	Right-handed 310
Helix 71	71	G	557	562	Right-handed alpha
Helix 72	72	G	564	568	Right-handed 310
Helix 73	73	G	584	588	Right-handed 310
Helix 74	74	H	33	38	Right-handed alpha
Helix 75	75	H	38	62	Right-handed alpha
Helix 76	76	H	67	71	Right-handed 310

There are 40 sheets in PDB entry 1H4J. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, CA, CB, CC, CD, CE, CF, CG, CH, CI, CJ, EA, EB, EC, ED, EE, EF, EG, EH, EI, EJ, GA, GB, GC, GD, GE, GF, GG, GH, GI, GJ,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	A	479	482	parallel
Strand 3	A	486	490	anti-parallel
Strand 4	A	495	500	anti-parallel
Strand 5	A	506	511	anti-parallel

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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	47	first strand
Strand 2	A	574	580	anti-parallel
Strand 3	A	528	535	anti-parallel
Strand 4	A	521	525	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	61	first strand
Strand 2	A	64	68	anti-parallel
Strand 3	A	75	79	anti-parallel
Strand 4	A	82	90	anti-parallel

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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	114	first strand
Strand 2	A	123	127	anti-parallel
Strand 3	A	132	137	anti-parallel
Strand 4	A	143	148	anti-parallel

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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	165	first strand
Strand 2	A	168	171	anti-parallel
Strand 3	A	183	188	anti-parallel
Strand 4	A	194	199	anti-parallel

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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	249	first strand
Strand 2	A	254	258	anti-parallel
Strand 3	A	279	284	anti-parallel
Strand 4	A	290	295	anti-parallel

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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	316	first strand
Strand 2	A	322	329	anti-parallel
Strand 3	A	334	339	anti-parallel
Strand 4	A	345	350	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	361	first strand
Strand 2	A	368	370	anti-parallel

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There are 3 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	385	first strand
Strand 2	A	414	420	anti-parallel
Strand 3	A	434	440	anti-parallel

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There are 4 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	399	401	first strand
Strand 2	A	406	412	anti-parallel
Strand 3	A	453	458	anti-parallel
Strand 4	A	465	471	anti-parallel

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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	27	first strand
Strand 2	C	479	482	parallel
Strand 3	C	486	490	anti-parallel
Strand 4	C	495	500	anti-parallel
Strand 5	C	506	511	anti-parallel

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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	40	47	first strand
Strand 2	C	574	580	anti-parallel
Strand 3	C	528	535	anti-parallel
Strand 4	C	521	525	anti-parallel

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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	64	68	anti-parallel
Strand 3	C	75	79	anti-parallel
Strand 4	C	82	90	anti-parallel

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There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	114	first strand
Strand 2	C	123	127	anti-parallel
Strand 3	C	132	137	anti-parallel
Strand 4	C	143	148	anti-parallel

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There are 4 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	165	first strand
Strand 2	C	168	171	anti-parallel
Strand 3	C	183	188	anti-parallel
Strand 4	C	194	199	anti-parallel

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There are 4 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	247	249	first strand
Strand 2	C	254	258	anti-parallel
Strand 3	C	279	284	anti-parallel
Strand 4	C	290	295	anti-parallel

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There are 4 strands in CG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	316	first strand
Strand 2	C	322	329	anti-parallel
Strand 3	C	334	339	anti-parallel
Strand 4	C	345	350	anti-parallel

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There are 2 strands in CH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	361	first strand
Strand 2	C	368	370	anti-parallel

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There are 3 strands in CI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	382	385	first strand
Strand 2	C	414	420	anti-parallel
Strand 3	C	434	440	anti-parallel

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There are 4 strands in CJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	399	401	first strand
Strand 2	C	406	412	anti-parallel
Strand 3	C	453	458	anti-parallel
Strand 4	C	465	471	anti-parallel

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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	26	27	first strand
Strand 2	E	479	482	parallel
Strand 3	E	486	490	anti-parallel
Strand 4	E	495	500	anti-parallel
Strand 5	E	506	511	anti-parallel

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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	47	first strand
Strand 2	E	574	580	anti-parallel
Strand 3	E	528	535	anti-parallel
Strand 4	E	521	525	anti-parallel

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There are 4 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	61	first strand
Strand 2	E	64	68	anti-parallel
Strand 3	E	75	79	anti-parallel
Strand 4	E	82	90	anti-parallel

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There are 4 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	112	114	first strand
Strand 2	E	123	127	anti-parallel
Strand 3	E	132	137	anti-parallel
Strand 4	E	143	148	anti-parallel

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There are 4 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	165	first strand
Strand 2	E	168	171	anti-parallel
Strand 3	E	183	188	anti-parallel
Strand 4	E	194	199	anti-parallel

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There are 4 strands in EF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	247	249	first strand
Strand 2	E	254	258	anti-parallel
Strand 3	E	279	284	anti-parallel
Strand 4	E	290	295	anti-parallel

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There are 4 strands in EG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	311	316	first strand
Strand 2	E	322	329	anti-parallel
Strand 3	E	334	339	anti-parallel
Strand 4	E	345	350	anti-parallel

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There are 2 strands in EH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	358	361	first strand
Strand 2	E	368	370	anti-parallel

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There are 3 strands in EI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	382	385	first strand
Strand 2	E	414	420	anti-parallel
Strand 3	E	434	440	anti-parallel

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There are 4 strands in EJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	399	401	first strand
Strand 2	E	406	412	anti-parallel
Strand 3	E	453	458	anti-parallel
Strand 4	E	465	471	anti-parallel

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There are 5 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	26	27	first strand
Strand 2	G	480	482	parallel
Strand 3	G	486	490	anti-parallel
Strand 4	G	495	500	anti-parallel
Strand 5	G	506	511	anti-parallel

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There are 4 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	40	47	first strand
Strand 2	G	574	580	anti-parallel
Strand 3	G	528	535	anti-parallel
Strand 4	G	521	525	anti-parallel

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There are 4 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	61	first strand
Strand 2	G	64	68	anti-parallel
Strand 3	G	75	79	anti-parallel
Strand 4	G	82	90	anti-parallel

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There are 4 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	112	114	first strand
Strand 2	G	123	127	anti-parallel
Strand 3	G	132	137	anti-parallel
Strand 4	G	143	148	anti-parallel

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There are 4 strands in GE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	163	165	first strand
Strand 2	G	168	171	anti-parallel
Strand 3	G	183	188	anti-parallel
Strand 4	G	194	199	anti-parallel

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There are 4 strands in GF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	247	249	first strand
Strand 2	G	254	258	anti-parallel
Strand 3	G	279	284	anti-parallel
Strand 4	G	290	295	anti-parallel

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There are 4 strands in GG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	311	316	first strand
Strand 2	G	322	329	anti-parallel
Strand 3	G	334	339	anti-parallel
Strand 4	G	345	350	anti-parallel

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There are 2 strands in GH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	358	361	first strand
Strand 2	G	368	370	anti-parallel

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There are 3 strands in GI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	382	385	first strand
Strand 2	G	414	420	anti-parallel
Strand 3	G	434	440	anti-parallel

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There are 4 strands in GJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	399	401	first strand
Strand 2	G	406	412	anti-parallel
Strand 3	G	453	458	anti-parallel
Strand 4	G	465	471	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1H4J

Analysis of interatomic Contacts of Structural Units in PDB entry:
1H4J