Analysis of interatomic Contacts of Structural Units in PDB entry:
1H5Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1H5Y entry

There are 2 chains in PDB entry 1H5Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 2ILE 253
B
 SER 1ILE 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1H5Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 18Right-handed 310
Helix 2
2
A
26 31Right-handed alpha
Helix 3
3
A
34 45Right-handed alpha
Helix 4
4
A
61 76Right-handed alpha
Helix 5
5
A
88 99Right-handed alpha
Helix 6
6
A
106 112Right-handed alpha
Helix 7
7
A
113 124Right-handed alpha
Helix 8
8
A
156 167Right-handed alpha
Helix 9
9
A
186 197Right-handed alpha
Helix 10
10
A
209 219Right-handed alpha
Helix 11
11
A
227 232Right-handed alpha
Helix 12
12
A
236 247Right-handed alpha
Helix 13
13
B
14 18Right-handed 310
Helix 14
14
B
26 30Right-handed alpha
Helix 15
15
B
34 46Right-handed alpha
Helix 16
16
B
61 76Right-handed alpha
Helix 17
17
B
88 99Right-handed alpha
Helix 18
18
B
106 112Right-handed alpha
Helix 19
19
B
113 124Right-handed alpha
Helix 20
20
B
156 166Right-handed alpha
Helix 21
21
B
186 197Right-handed alpha
Helix 22
22
B
209 219Right-handed alpha
Helix 23
23
B
227 232Right-handed alpha
Helix 24
24
B
236 247Right-handed alpha
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There are 4 sheets in PDB entry 1H5Y. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 11 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 13first strand
Strand 2
A
223 226parallel
Strand 3
A
201 204parallel
Strand 4
A
170 175parallel
Strand 5
A
128 136parallel
Strand 6
A
102 105parallel
Strand 7
A
80 83parallel
Strand 8
A
50 54parallel
Strand 9
A
6 13parallel
Strand 10
A
223 226parallel
Strand 11
A
6 13parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 20first strand
Strand 2
A
31 33anti-parallel
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There are 11 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 13first strand
Strand 2
B
223 226parallel
Strand 3
B
201 204parallel
Strand 4
B
170 175parallel
Strand 5
B
128 136parallel
Strand 6
B
102 105parallel
Strand 7
B
80 83parallel
Strand 8
B
50 54parallel
Strand 9
B
6 13parallel
Strand 10
B
223 226parallel
Strand 11
B
6 13parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 20first strand
Strand 2
B
31 33anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il