Analysis of interatomic Contacts of Structural Units in PDB entry:
1H6F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1H6F entry

There are 4 chains in PDB entry 1H6F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 102ASP 285
B
 LYS 100ASP 285
C
 T 1 T 24
D
 T 1 T 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1H6F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
109 120Right-handed alpha
Helix 2
2
A
194 198Right-handed alpha
Helix 3
3
A
239 246Right-handed 310
Helix 4
4
A
254 257Right-handed 310
Helix 5
5
A
266 277Right-handed alpha
Helix 6
6
A
278 284Right-handed 310
Helix 7
7
B
109 120Right-handed alpha
Helix 8
8
B
194 199Right-handed alpha
Helix 9
9
B
239 243Right-handed 310
Helix 10
10
B
254 257Right-handed 310
Helix 11
11
B
266 277Right-handed alpha
Helix 12
12
B
278 284Right-handed 310
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There are 8 sheets in PDB entry 1H6F. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 107first strand
Strand 2
A
137 141anti-parallel
Strand 3
A
202 203anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
258 261parallel
Strand 3
A
226 235anti-parallel
Strand 4
A
148 166anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 124first strand
Strand 2
A
258 261parallel
Strand 3
A
226 235anti-parallel
Strand 4
A
249 252anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
A
220 221parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 107first strand
Strand 2
B
137 141anti-parallel
Strand 3
B
202 203anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 124first strand
Strand 2
B
258 261parallel
Strand 3
B
226 235anti-parallel
Strand 4
B
148 166anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 124first strand
Strand 2
B
258 261parallel
Strand 3
B
226 235anti-parallel
Strand 4
B
249 252anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
B
220 221parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il