Analysis of interatomic Contacts of Structural Units in PDB entry:
1H80


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1H80 entry

There are 2 chains in PDB entry 1H80 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 28ARG 491
B
 VAL 28ARG 491
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1H80. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 38Right-handed 310
Helix 2
2
A
51 56Right-handed alpha
Helix 3
3
A
65 78Right-handed alpha
Helix 4
4
A
248 255Right-handed alpha
Helix 5
5
A
357 368Right-handed alpha
Helix 6
6
A
394 403Right-handed 310
Helix 7
7
A
485 491Right-handed alpha
Helix 8
8
B
34 38Right-handed 310
Helix 9
9
B
51 56Right-handed alpha
Helix 10
10
B
65 78Right-handed alpha
Helix 11
11
B
248 255Right-handed alpha
Helix 12
12
B
357 368Right-handed alpha
Helix 13
13
B
394 403Right-handed 310
Helix 14
14
B
485 491Right-handed alpha
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There are 9 sheets in PDB entry 1H80. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
83 87parallel
Strand 3
A
103 107parallel
Strand 4
A
135 142parallel
Strand 5
A
167 178parallel
Strand 6
A
147 150parallel
Strand 7
A
112 115parallel
Strand 8
A
91 94parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
83 87parallel
Strand 3
A
103 107parallel
Strand 4
A
135 142parallel
Strand 5
A
167 178parallel
Strand 6
A
197 212parallel
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There are 10 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
124 129parallel
Strand 3
A
159 164parallel
Strand 4
A
187 189parallel
Strand 5
A
219 223parallel
Strand 6
A
240 245parallel
Strand 7
A
274 279parallel
Strand 8
A
302 304parallel
Strand 9
A
434 436parallel
Strand 10
A
465 466parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 311first strand
Strand 2
A
352 353anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 393first strand
Strand 2
A
426 428anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
83 87parallel
Strand 3
B
103 107parallel
Strand 4
B
135 142parallel
Strand 5
B
167 178parallel
Strand 6
B
147 150parallel
Strand 7
B
112 115parallel
Strand 8
B
91 94parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 50first strand
Strand 2
B
83 87parallel
Strand 3
B
103 107parallel
Strand 4
B
135 142parallel
Strand 5
B
167 178parallel
Strand 6
B
197 212parallel
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There are 10 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 98first strand
Strand 2
B
124 129parallel
Strand 3
B
159 164parallel
Strand 4
B
187 189parallel
Strand 5
B
219 223parallel
Strand 6
B
240 245parallel
Strand 7
B
274 279parallel
Strand 8
B
302 304parallel
Strand 9
B
434 436parallel
Strand 10
B
465 466parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 393first strand
Strand 2
B
426 428anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il