Analysis of interatomic Contacts of Structural Units in PDB entry:
1H8R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1H8R entry

There is 1 chain in PDB entry 1H8R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 5GLU 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1H8R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 27Right-handed alpha
Helix 2
2
A
73 81Right-handed alpha
Helix 3
3
A
106 121Right-handed alpha
Helix 4
4
A
122 124Right-handed 310
Helix 5
5
A
139 144Right-handed alpha
Helix 6
6
A
156 172Right-handed alpha
Helix 7
7
A
174 177Right-handed 310
Helix 8
8
A
179 184Right-handed alpha
Helix 9
9
A
186 192Right-handed alpha
Helix 10
10
A
204 214Right-handed alpha
Helix 11
11
A
265 270Right-handed alpha
Helix 12
12
A
279 288Right-handed alpha
Helix 13
13
A
346 355Right-handed alpha
Helix 14
14
A
356 372Right-handed alpha
Helix 15
15
A
407 416Right-handed alpha
Helix 16
16
A
435 455Right-handed alpha
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There are 6 sheets in PDB entry 1H8R. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 231first strand
Strand 2
A
32 34parallel
Strand 3
A
9 10parallel
Strand 4
A
260 263parallel
Strand 5
A
421 424parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
52 55anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
196 199anti-parallel
Strand 3
A
84 87anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 257first strand
Strand 2
A
245 249anti-parallel
Strand 3
A
235 239anti-parallel
Strand 4
A
273 274parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
398 399anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 316first strand
Strand 2
A
326 329anti-parallel
Strand 3
A
339 344anti-parallel
Strand 4
A
295 300anti-parallel
Strand 5
A
382 384anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il