Analysis of interatomic Contacts of Structural Units in PDB entry:
1H8T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1H8T entry

There are 4 chains in PDB entry 1H8T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1SER 290
B
 SER 1010GLN 1262
C
 GLY 2001GLN 2238
D
 GLY 3002ASN 3069
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1H8T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 48Right-handed alpha
Helix 2
2
A
59 62Right-handed 310
Helix 3
3
A
63 69Right-handed alpha
Helix 4
4
A
86 88Right-handed 310
Helix 5
5
A
100 108Right-handed alpha
Helix 6
6
A
159 164Right-handed 310
Helix 7
7
A
210 214Right-handed 310
Helix 8
8
B
1056 1060Right-handed 310
Helix 9
9
B
1094 1098Right-handed alpha
Helix 10
10
B
1170 1173Right-handed 310
Helix 11
11
B
1181 1185Right-handed 310
Helix 12
12
C
2042 2048Right-handed alpha
Helix 13
13
C
2064 2069Right-handed 310
Helix 14
14
C
2103 2105Right-handed 310
Helix 15
15
C
2144 2149Right-handed alpha
Helix 16
16
D
3035 3039Right-handed 310
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There are 13 sheets in PDB entry 1H8T. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, BF, CA, A,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
C
2163 2168anti-parallel
Strand 3
C
2107 2120anti-parallel
Strand 4
C
2207 2225anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
C
2163 2168anti-parallel
Strand 3
C
2107 2120anti-parallel
Strand 4
C
2177 2178anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 75first strand
Strand 2
A
232 250anti-parallel
Strand 3
A
79 80anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
72 75first strand
Strand 2
A
232 250anti-parallel
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There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
219 223anti-parallel
Strand 3
A
141 146anti-parallel
Strand 4
A
169 173anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1014 1017first strand
Strand 2
B
1022 1025anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1031 1032first strand
Strand 2
D
3057 3058anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1064 1065first strand
Strand 2
B
1239 1246anti-parallel
Strand 3
B
1069 1071anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1064 1065first strand
Strand 2
B
1239 1246anti-parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1079 1081first strand
Strand 2
B
1219 1230anti-parallel
Strand 3
B
1119 1128anti-parallel
Strand 4
B
1187 1190anti-parallel
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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1099 1101first strand
Strand 2
B
1253 1255anti-parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2153 2156first strand
Strand 2
C
2127 2134anti-parallel
Strand 3
C
2190 2199anti-parallel
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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3004 3007first strand
Strand 2
D
3026 3029anti-parallel
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