Analysis of interatomic Contacts of Structural Units in PDB entry:
1H8V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1H8V entry

There are 6 chains in PDB entry 1H8V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	ASN 218
B	THR 2	ASN 218
C	THR 2	ASN 218
D	THR 2	ASN 218
E	THR 2	ASN 218
F	THR 2	ASN 218

There are 12 helices in PDB entry 1H8V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	23	27	Right-handed 310
Helix 2	2	A	172	183	Right-handed alpha
Helix 3	3	B	23	27	Right-handed 310
Helix 4	4	B	172	184	Right-handed alpha
Helix 5	5	C	23	27	Right-handed 310
Helix 6	6	C	172	183	Right-handed alpha
Helix 7	7	D	23	27	Right-handed 310
Helix 8	8	D	172	183	Right-handed alpha
Helix 9	9	E	23	27	Right-handed 310
Helix 10	10	E	172	183	Right-handed alpha
Helix 11	11	F	23	27	Right-handed 310
Helix 12	12	F	172	183	Right-handed alpha

There are 6 sheets in PDB entry 1H8V. Click on sheet of interest to get list of strands forming it: AA, BA, CA, DA, EA, FA,

There are 19 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	3	first strand
Strand 2	A	28	37	anti-parallel
Strand 3	A	43	51	anti-parallel
Strand 4	A	201	215	anti-parallel
Strand 5	A	80	103	anti-parallel
Strand 6	A	9	12	first strand
Strand 7	A	15	18	parallel
Strand 8	A	61	65	anti-parallel
Strand 9	A	196	199	parallel
Strand 10	A	80	103	anti-parallel
Strand 11	A	132	139	first strand
Strand 12	A	142	151	anti-parallel
Strand 13	A	154	161	anti-parallel
Strand 14	A	115	124	parallel
Strand 15	A	80	103	anti-parallel
Strand 16	A	167	171	anti-parallel
Strand 17	A	80	103	anti-parallel
Strand 18	A	191	192	anti-parallel
Strand 19	A	80	103	anti-parallel

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There are 17 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	3	first strand
Strand 2	B	28	37	anti-parallel
Strand 3	B	42	51	anti-parallel
Strand 4	B	201	215	anti-parallel
Strand 5	B	80	103	anti-parallel
Strand 6	B	9	11	first strand
Strand 7	B	15	18	parallel
Strand 8	B	61	65	anti-parallel
Strand 9	B	191	199	anti-parallel
Strand 10	B	80	103	anti-parallel
Strand 11	B	132	139	first strand
Strand 12	B	142	151	anti-parallel
Strand 13	B	154	161	anti-parallel
Strand 14	B	115	124	parallel
Strand 15	B	80	103	anti-parallel
Strand 16	B	167	171	anti-parallel
Strand 17	B	80	103	anti-parallel

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There are 19 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	3	first strand
Strand 2	C	28	37	anti-parallel
Strand 3	C	42	51	anti-parallel
Strand 4	C	201	215	anti-parallel
Strand 5	C	80	103	anti-parallel
Strand 6	C	9	12	first strand
Strand 7	C	15	18	parallel
Strand 8	C	61	65	anti-parallel
Strand 9	C	196	199	parallel
Strand 10	C	80	103	anti-parallel
Strand 11	C	132	139	first strand
Strand 12	C	142	151	anti-parallel
Strand 13	C	154	161	anti-parallel
Strand 14	C	115	124	parallel
Strand 15	C	80	103	anti-parallel
Strand 16	C	167	171	anti-parallel
Strand 17	C	80	103	anti-parallel
Strand 18	C	191	192	anti-parallel
Strand 19	C	80	103	anti-parallel

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There are 19 strands in DA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	3	first strand
Strand 2	D	28	37	anti-parallel
Strand 3	D	42	51	anti-parallel
Strand 4	D	201	215	anti-parallel
Strand 5	D	80	103	anti-parallel
Strand 6	D	9	12	first strand
Strand 7	D	15	18	parallel
Strand 8	D	61	65	anti-parallel
Strand 9	D	196	199	parallel
Strand 10	D	80	103	anti-parallel
Strand 11	D	132	139	first strand
Strand 12	D	142	151	anti-parallel
Strand 13	D	154	161	anti-parallel
Strand 14	D	115	124	parallel
Strand 15	D	80	103	anti-parallel
Strand 16	D	167	171	anti-parallel
Strand 17	D	80	103	anti-parallel
Strand 18	D	191	192	anti-parallel
Strand 19	D	80	103	anti-parallel

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There are 19 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	3	first strand
Strand 2	E	28	37	anti-parallel
Strand 3	E	42	51	anti-parallel
Strand 4	E	201	215	anti-parallel
Strand 5	E	80	103	anti-parallel
Strand 6	E	9	12	first strand
Strand 7	E	15	18	parallel
Strand 8	E	61	65	anti-parallel
Strand 9	E	196	199	parallel
Strand 10	E	80	103	anti-parallel
Strand 11	E	132	139	first strand
Strand 12	E	142	151	anti-parallel
Strand 13	E	154	161	anti-parallel
Strand 14	E	115	124	parallel
Strand 15	E	80	103	anti-parallel
Strand 16	E	167	171	anti-parallel
Strand 17	E	80	103	anti-parallel
Strand 18	E	191	192	anti-parallel
Strand 19	E	80	103	anti-parallel

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There are 19 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	3	first strand
Strand 2	F	28	37	anti-parallel
Strand 3	F	43	51	anti-parallel
Strand 4	F	201	215	anti-parallel
Strand 5	F	80	103	anti-parallel
Strand 6	F	9	12	first strand
Strand 7	F	15	18	parallel
Strand 8	F	61	65	anti-parallel
Strand 9	F	196	199	parallel
Strand 10	F	80	103	anti-parallel
Strand 11	F	132	139	first strand
Strand 12	F	142	151	anti-parallel
Strand 13	F	154	161	anti-parallel
Strand 14	F	115	124	parallel
Strand 15	F	80	103	anti-parallel
Strand 16	F	167	171	anti-parallel
Strand 17	F	80	103	anti-parallel
Strand 18	F	191	192	anti-parallel
Strand 19	F	80	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1H8V

Analysis of interatomic Contacts of Structural Units in PDB entry:
1H8V