Analysis of interatomic Contacts of Structural Units in PDB entry:
1H8Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1H8Y entry

There are 2 chains in PDB entry 1H8Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 20GLY 266
B
 SER 20GLY 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1H8Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A1
A
29 34Right-handed alpha
Helix 2
A2
A
56 60Right-handed alpha
Helix 3
A3
A
66 79Right-handed alpha
Helix 4
A10
A
100 102Right-handed 310
Helix 5
A4
A
108 113Right-handed alpha
Helix 6
A5
A
117 127Right-handed alpha
Helix 7
A6
A
129 138Right-handed alpha
Helix 8
A11
A
153 156Right-handed 310
Helix 9
A7
A
163 174Right-handed alpha
Helix 10
A8
A
182 191Right-handed alpha
Helix 11
A9
A
244 260Right-handed alpha
Helix 12
A1
B
29 34Right-handed alpha
Helix 13
A2
B
56 60Right-handed alpha
Helix 14
A3
B
66 79Right-handed alpha
Helix 15
A10
B
100 102Right-handed 310
Helix 16
A4
B
108 113Right-handed alpha
Helix 17
A5
B
117 127Right-handed alpha
Helix 18
A6
B
129 138Right-handed alpha
Helix 19
A11
B
153 156Right-handed 310
Helix 20
A7
B
163 174Right-handed alpha
Helix 21
A8
B
182 191Right-handed alpha
Helix 22
A9
B
244 260Right-handed alpha
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There are 4 sheets in PDB entry 1H8Y. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
51 53parallel
Strand 3
A
39 45anti-parallel
Strand 4
A
231 241anti-parallel
Strand 5
A
216 228anti-parallel
Strand 6
A
200 208anti-parallel
Strand 7
A
193 197anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 63first strand
Strand 2
A
161 162anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 24first strand
Strand 2
B
51 53parallel
Strand 3
B
39 45anti-parallel
Strand 4
B
231 241anti-parallel
Strand 5
B
216 228anti-parallel
Strand 6
B
200 208anti-parallel
Strand 7
B
193 197anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
161 162anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il