Analysis of interatomic Contacts of Structural Units in PDB entry:
1H9D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1H9D entry

There are 8 chains in PDB entry 1H9D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 54ARG 178
B
 PRO 2GLU 135
C
 VAL 54ARG 178
D
 PRO 2GLU 135
E
 G 1 G 10
F
 C 1 C 10
G
 G 1 G 10
H
 C 1 C 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 1H9D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
B
7 15Right-handed alpha
Helix 2
2
B
15 20Right-handed alpha
Helix 3
3
B
36 50Right-handed alpha
Helix 4
4
B
128 135Right-handed alpha
Helix 5
5
D
7 15Right-handed alpha
Helix 6
6
D
15 23Right-handed alpha
Helix 7
7
D
36 50Right-handed alpha
Helix 8
8
D
128 135Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 1H9D. Click on sheet of interest to get list of strands forming it: AA, AB, AC, CA, CB, CC,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
70 73anti-parallel
Strand 3
A
90 93anti-parallel
Strand 4
A
128 130anti-parallel
Strand 5
A
121 125anti-parallel
Strand 6
A
102 108anti-parallel
Strand 7
A
146 152anti-parallel
Strand 8
A
158 169anti-parallel
Strand 9
A
78 80parallel
Back to list of sheets
Back to top of page

There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
70 73anti-parallel
Strand 3
A
90 93anti-parallel
Strand 4
A
128 130anti-parallel
Strand 5
A
121 125anti-parallel
Strand 6
A
102 108anti-parallel
Strand 7
A
146 152anti-parallel
Strand 8
A
158 169anti-parallel
Strand 9
B
94 103parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
135 136anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 64first strand
Strand 2
C
70 73anti-parallel
Strand 3
C
90 93anti-parallel
Strand 4
C
128 130anti-parallel
Strand 5
C
121 125anti-parallel
Strand 6
C
102 108anti-parallel
Strand 7
C
146 152anti-parallel
Strand 8
C
158 169anti-parallel
Strand 9
C
78 80parallel
Back to list of sheets
Back to top of page

There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 64first strand
Strand 2
C
70 73anti-parallel
Strand 3
C
90 93anti-parallel
Strand 4
C
128 130anti-parallel
Strand 5
C
121 125anti-parallel
Strand 6
C
102 108anti-parallel
Strand 7
C
146 152anti-parallel
Strand 8
C
158 169anti-parallel
Strand 9
D
94 103parallel
Back to list of sheets
Back to top of page

There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 118first strand
Strand 2
C
135 136anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il