Analysis of interatomic Contacts of Structural Units in PDB entry:
1HC7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1HC7 entry

There are 4 chains in PDB entry 1HC7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 5	TYR 477
B	LYS 5	TYR 477
C	LYS 5	TYR 477
D	LYS 5	TYR 477

There are 59 helices in PDB entry 1HC7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	14	Right-handed alpha
Helix 2	2	A	13	25	Right-handed alpha
Helix 3	3	A	40	61	Right-handed alpha
Helix 4	4	A	112	124	Right-handed alpha
Helix 5	5	A	127	130	Right-handed 310
Helix 6	6	A	167	191	Right-handed alpha
Helix 7	7	A	234	240	Right-handed alpha
Helix 8	8	A	263	274	Right-handed alpha
Helix 9	9	A	300	318	Right-handed alpha
Helix 10	10	A	331	342	Right-handed alpha
Helix 11	11	A	351	357	Right-handed alpha
Helix 12	12	A	376	403	Right-handed alpha
Helix 13	13	A	409	417	Right-handed alpha
Helix 14	14	A	429	441	Right-handed alpha
Helix 15	15	B	9	14	Right-handed alpha
Helix 16	16	B	13	25	Right-handed alpha
Helix 17	17	B	40	60	Right-handed alpha
Helix 18	18	B	75	77	Right-handed 310
Helix 19	19	B	112	124	Right-handed alpha
Helix 20	20	B	127	130	Right-handed 310
Helix 21	21	B	167	191	Right-handed alpha
Helix 22	22	B	234	241	Right-handed alpha
Helix 23	23	B	263	274	Right-handed alpha
Helix 24	24	B	297	299	Right-handed 310
Helix 25	25	B	300	317	Right-handed alpha
Helix 26	26	B	331	342	Right-handed alpha
Helix 27	27	B	351	357	Right-handed alpha
Helix 28	28	B	376	403	Right-handed alpha
Helix 29	29	B	409	417	Right-handed alpha
Helix 30	30	B	429	441	Right-handed alpha
Helix 31	31	C	9	14	Right-handed alpha
Helix 32	32	C	13	25	Right-handed alpha
Helix 33	33	C	40	61	Right-handed alpha
Helix 34	34	C	75	77	Right-handed 310
Helix 35	35	C	112	124	Right-handed alpha
Helix 36	36	C	127	130	Right-handed 310
Helix 37	37	C	167	191	Right-handed alpha
Helix 38	38	C	234	241	Right-handed alpha
Helix 39	39	C	263	274	Right-handed alpha
Helix 40	40	C	300	318	Right-handed alpha
Helix 41	41	C	331	342	Right-handed alpha
Helix 42	42	C	351	357	Right-handed alpha
Helix 43	43	C	376	403	Right-handed alpha
Helix 44	44	C	409	417	Right-handed alpha
Helix 45	45	C	429	441	Right-handed alpha
Helix 46	46	D	13	25	Right-handed alpha
Helix 47	47	D	40	61	Right-handed alpha
Helix 48	48	D	75	77	Right-handed 310
Helix 49	49	D	112	124	Right-handed alpha
Helix 50	50	D	127	130	Right-handed 310
Helix 51	51	D	167	189	Right-handed alpha
Helix 52	52	D	234	241	Right-handed alpha
Helix 53	53	D	263	274	Right-handed alpha
Helix 54	54	D	300	318	Right-handed alpha
Helix 55	55	D	331	341	Right-handed alpha
Helix 56	56	D	351	357	Right-handed alpha
Helix 57	57	D	376	403	Right-handed alpha
Helix 58	58	D	409	417	Right-handed alpha
Helix 59	59	D	429	441	Right-handed alpha

There are 19 sheets in PDB entry 1HC7. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, CA, CB, CC, CD, CE, A, DB, C, DD, DE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	37	39	anti-parallel

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There are 11 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	132	141	parallel
Strand 3	A	155	165	anti-parallel
Strand 4	A	255	262	anti-parallel
Strand 5	A	223	233	anti-parallel
Strand 6	A	210	217	anti-parallel
Strand 7	A	195	198	anti-parallel
Strand 8	A	443	448	anti-parallel
Strand 9	A	471	474	anti-parallel
Strand 10	A	421	424	anti-parallel
Strand 11	A	404	406	parallel

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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	73	first strand
Strand 2	A	101	108	anti-parallel
Strand 3	A	92	97	anti-parallel
Strand 4	B	92	97	anti-parallel
Strand 5	B	100	108	anti-parallel
Strand 6	B	71	73	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	245	first strand
Strand 2	A	251	253	anti-parallel

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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	324	first strand
Strand 2	A	290	294	parallel
Strand 3	A	346	350	parallel
Strand 4	A	359	364	anti-parallel
Strand 5	A	371	373	anti-parallel

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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	37	39	anti-parallel

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There are 11 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	132	141	parallel
Strand 3	B	155	165	anti-parallel
Strand 4	B	255	262	anti-parallel
Strand 5	B	223	233	anti-parallel
Strand 6	B	210	217	anti-parallel
Strand 7	B	195	198	anti-parallel
Strand 8	B	443	448	anti-parallel
Strand 9	B	471	474	anti-parallel
Strand 10	B	421	424	anti-parallel
Strand 11	B	404	406	parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	245	first strand
Strand 2	B	251	253	anti-parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	324	first strand
Strand 2	B	290	294	parallel
Strand 3	B	346	350	parallel
Strand 4	B	359	364	anti-parallel
Strand 5	B	369	373	anti-parallel

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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	37	39	anti-parallel

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There are 11 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	132	141	parallel
Strand 3	C	155	165	anti-parallel
Strand 4	C	255	262	anti-parallel
Strand 5	C	223	233	anti-parallel
Strand 6	C	210	217	anti-parallel
Strand 7	C	195	198	anti-parallel
Strand 8	C	443	448	anti-parallel
Strand 9	C	471	474	anti-parallel
Strand 10	C	421	424	anti-parallel
Strand 11	C	404	406	parallel

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There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	73	first strand
Strand 2	C	100	108	anti-parallel
Strand 3	C	93	97	anti-parallel
Strand 4	D	92	97	anti-parallel
Strand 5	D	100	108	anti-parallel
Strand 6	D	71	73	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	245	first strand
Strand 2	C	251	253	anti-parallel

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There are 5 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	324	first strand
Strand 2	C	290	294	parallel
Strand 3	C	346	350	parallel
Strand 4	C	359	364	anti-parallel
Strand 5	C	369	373	anti-parallel

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There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	30	first strand
Strand 2	D	37	39	anti-parallel

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There are 11 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	65	first strand
Strand 2	D	132	141	parallel
Strand 3	D	155	165	anti-parallel
Strand 4	D	255	262	anti-parallel
Strand 5	D	223	233	anti-parallel
Strand 6	D	210	217	anti-parallel
Strand 7	D	195	198	anti-parallel
Strand 8	D	443	448	anti-parallel
Strand 9	D	471	474	anti-parallel
Strand 10	D	421	424	anti-parallel
Strand 11	D	404	406	parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	245	first strand
Strand 2	D	251	253	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	279	280	first strand
Strand 2	D	342	343	first strand

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There are 5 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	322	324	first strand
Strand 2	D	290	294	parallel
Strand 3	D	346	350	parallel
Strand 4	D	359	364	anti-parallel
Strand 5	D	369	373	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1HC7

Analysis of interatomic Contacts of Structural Units in PDB entry:
1HC7