Analysis of interatomic Contacts of Structural Units in PDB entry:
1HFJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1HFJ entry

There are 2 chains in PDB entry 1HFJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3TYR 327
C
 LYS 3TYR 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1HFJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 18Right-handed 310
Helix 2
2
A
35 43Right-handed alpha
Helix 3
3
A
44 49Right-handed 310
Helix 4
4
A
61 65Right-handed 310
Helix 5
5
A
66 83Right-handed alpha
Helix 6
6
A
97 109Right-handed alpha
Helix 7
7
A
130 144Right-handed alpha
Helix 8
8
A
145 148Right-handed 310
Helix 9
9
A
203 207Right-handed 310
Helix 10
10
A
231 239Right-handed alpha
Helix 11
11
A
256 268Right-handed alpha
Helix 12
12
A
299 311Right-handed alpha
Helix 13
13
A
316 327Right-handed alpha
Helix 14
14
C
15 18Right-handed 310
Helix 15
15
C
35 43Right-handed alpha
Helix 16
16
C
44 49Right-handed 310
Helix 17
17
C
61 65Right-handed 310
Helix 18
18
C
66 83Right-handed alpha
Helix 19
19
C
97 109Right-handed alpha
Helix 20
20
C
130 144Right-handed alpha
Helix 21
21
C
145 148Right-handed 310
Helix 22
22
C
203 207Right-handed 310
Helix 23
23
C
231 239Right-handed alpha
Helix 24
24
C
256 268Right-handed alpha
Helix 25
25
C
299 311Right-handed alpha
Helix 26
26
C
316 327Right-handed alpha
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There are 6 sheets in PDB entry 1HFJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, CA, CB, CC,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 60first strand
Strand 2
A
6 13parallel
Strand 3
A
88 92parallel
Strand 4
A
115 118parallel
Strand 5
A
153 156parallel
Strand 6
A
159 162anti-parallel
Strand 7
A
186 189anti-parallel
Strand 8
A
192 195anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
177 178anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 224first strand
Strand 2
A
244 249parallel
Strand 3
A
272 277parallel
Strand 4
A
293 294parallel
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There are 8 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
51 60first strand
Strand 2
C
6 13parallel
Strand 3
C
88 92parallel
Strand 4
C
115 118parallel
Strand 5
C
153 156parallel
Strand 6
C
159 162anti-parallel
Strand 7
C
186 189anti-parallel
Strand 8
C
192 195anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
167 168first strand
Strand 2
C
177 178anti-parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
220 224first strand
Strand 2
C
244 249parallel
Strand 3
C
272 277parallel
Strand 4
C
293 294parallel
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