Analysis of interatomic Contacts of Structural Units in PDB entry:
1HJ3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1HJ3 entry

There are 2 chains in PDB entry 1HJ3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 17TYR 567
B
 GLU 26TYR 567
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1HJ3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 35Right-handed 310
Helix 2
2
A
50 65Right-handed alpha
Helix 3
3
A
82 89Right-handed alpha
Helix 4
4
A
91 100Right-handed alpha
Helix 5
5
A
116 129Right-handed alpha
Helix 6
6
A
139 146Right-handed alpha
Helix 7
7
A
151 155Right-handed 310
Helix 8
8
A
164 167Right-handed 310
Helix 9
9
A
361 364Right-handed 310
Helix 10
10
A
424 428Right-handed 310
Helix 11
11
A
476 478Right-handed 310
Helix 12
12
A
491 496Right-handed alpha
Helix 13
13
A
559 564Right-handed alpha
Helix 14
14
B
50 65Right-handed alpha
Helix 15
15
B
82 89Right-handed alpha
Helix 16
16
B
91 100Right-handed alpha
Helix 17
17
B
116 129Right-handed alpha
Helix 18
18
B
139 146Right-handed alpha
Helix 19
19
B
151 155Right-handed 310
Helix 20
20
B
164 167Right-handed 310
Helix 21
21
B
361 363Right-handed 310
Helix 22
22
B
424 428Right-handed 310
Helix 23
23
B
476 478Right-handed 310
Helix 24
24
B
491 496Right-handed alpha
Helix 25
25
B
559 564Right-handed alpha
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There are 15 sheets in PDB entry 1HJ3. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 148first strand
Strand 2
A
232 236anti-parallel
Strand 3
A
220 224anti-parallel
Strand 4
A
210 214anti-parallel
Strand 5
A
201 204anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 193first strand
Strand 2
A
179 182anti-parallel
Strand 3
A
169 172anti-parallel
Strand 4
A
557 558anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 247first strand
Strand 2
A
258 260anti-parallel
Strand 3
A
267 271anti-parallel
Strand 4
A
278 283anti-parallel
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There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 305first strand
Strand 2
A
311 316anti-parallel
Strand 3
A
322 326anti-parallel
Strand 4
A
332 338anti-parallel
Strand 5
B
332 338anti-parallel
Strand 6
B
322 326anti-parallel
Strand 7
B
311 316anti-parallel
Strand 8
B
300 305anti-parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 360first strand
Strand 2
A
365 370anti-parallel
Strand 3
A
376 380anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 395first strand
Strand 2
A
403 407anti-parallel
Strand 3
A
413 417anti-parallel
Strand 4
A
433 436anti-parallel
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There are 4 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 446first strand
Strand 2
A
453 456anti-parallel
Strand 3
A
470 474anti-parallel
Strand 4
A
488 490anti-parallel
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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
504 506first strand
Strand 2
A
516 522anti-parallel
Strand 3
A
530 535anti-parallel
Strand 4
A
540 545anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 148first strand
Strand 2
B
232 236anti-parallel
Strand 3
B
220 224anti-parallel
Strand 4
B
210 214anti-parallel
Strand 5
B
201 204anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 193first strand
Strand 2
B
179 182anti-parallel
Strand 3
B
169 172anti-parallel
Strand 4
B
557 558anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 247first strand
Strand 2
B
258 260anti-parallel
Strand 3
B
267 271anti-parallel
Strand 4
B
278 283anti-parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 360first strand
Strand 2
B
365 370anti-parallel
Strand 3
B
376 381anti-parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
394 395first strand
Strand 2
B
403 407anti-parallel
Strand 3
B
413 417anti-parallel
Strand 4
B
433 436anti-parallel
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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
445 446first strand
Strand 2
B
453 456anti-parallel
Strand 3
B
470 474anti-parallel
Strand 4
B
488 490anti-parallel
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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
504 506first strand
Strand 2
B
516 522anti-parallel
Strand 3
B
530 535anti-parallel
Strand 4
B
540 545anti-parallel
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