Analysis of interatomic Contacts of Structural Units in PDB entry:
1HJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1HJB entry

There are 10 chains in PDB entry 1HJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 268GLN 333
B
 ASP 268LEU 334
C
 GLY 60HIS 179
D
 ASP 268PRO 335
E
 ASP 268PRO 335
F
 GLY 60HIS 179
G
 G 1 G 26
H
 C 1 T 26
I
 G 1 G 26
J
 C 1 T 26
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 1HJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
271 333Right-handed alpha
Helix 2
2
B
271 334Right-handed alpha
Helix 3
3
D
271 334Right-handed alpha
Helix 4
4
E
271 334Right-handed alpha
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There are 7 sheets in PDB entry 1HJB. Click on sheet of interest to get list of strands forming it: CA, CB, CC, FA, FB, FC, FD,

There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 64first strand
Strand 2
C
70 73anti-parallel
Strand 3
C
90 93anti-parallel
Strand 4
C
128 130anti-parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 80first strand
Strand 2
C
158 169parallel
Strand 3
C
146 152anti-parallel
Strand 4
C
102 108anti-parallel
Strand 5
C
121 123anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
117 118first strand
Strand 2
C
135 136anti-parallel
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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
62 64first strand
Strand 2
F
70 73anti-parallel
Strand 3
F
89 93anti-parallel
Strand 4
F
128 131anti-parallel
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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
78 80first strand
Strand 2
F
167 169parallel
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There are 4 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
121 123first strand
Strand 2
F
102 108anti-parallel
Strand 3
F
147 152anti-parallel
Strand 4
F
158 162anti-parallel
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There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
117 118first strand
Strand 2
F
135 136anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il