Analysis of interatomic Contacts of Structural Units in PDB entry:
1HKM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1HKM entry

There is 1 chain in PDB entry 1HKM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 22SER 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1HKM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
31 35Right-handed 310
Helix 2
2
A
36 40Right-handed 310
Helix 3
3
A
42 46Right-handed 310
Helix 4
4
A
72 83Right-handed alpha
Helix 5
5
A
84 86Right-handed 310
Helix 6
6
A
99 102Right-handed 310
Helix 7
7
A
103 110Right-handed alpha
Helix 8
8
A
112 131Right-handed alpha
Helix 9
9
A
150 174Right-handed alpha
Helix 10
10
A
187 195Right-handed alpha
Helix 11
11
A
196 202Right-handed alpha
Helix 12
12
A
235 241Right-handed 310
Helix 13
13
A
242 253Right-handed alpha
Helix 14
14
A
303 308Right-handed alpha
Helix 15
15
A
336 351Right-handed alpha
Helix 16
16
A
359 363Right-handed 310
Helix 17
17
A
375 386Right-handed alpha
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There are 2 sheets in PDB entry 1HKM. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 11 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 29first strand
Strand 2
A
354 358parallel
Strand 3
A
260 265parallel
Strand 4
A
206 209parallel
Strand 5
A
179 184parallel
Strand 6
A
134 138parallel
Strand 7
A
91 97parallel
Strand 8
A
53 62parallel
Strand 9
A
23 29parallel
Strand 10
A
354 358parallel
Strand 11
A
23 29parallel
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There are 8 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 288first strand
Strand 2
A
267 273anti-parallel
Strand 3
A
300 302anti-parallel
Strand 4
A
267 273anti-parallel
Strand 5
A
313 314first strand
Strand 6
A
324 327anti-parallel
Strand 7
A
330 333anti-parallel
Strand 8
A
267 273anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il