Analysis of interatomic Contacts of Structural Units in PDB entry:
1HMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1HMP entry

There are 2 chains in PDB entry 1HMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4ALA 217
B
 SER 4ALA 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1HMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A1
A
25 29Right-handed alpha
Helix 2
A2
A
38 54Right-handed alpha
Helix 3
A3
A
72 86Right-handed alpha
Helix 4
A4
A
118 123Right-handed alpha
Helix 5
A5
A
140 151Right-handed alpha
Helix 6
A6
A
209 214Right-handed alpha
Helix 7
B1
B
25 29Right-handed alpha
Helix 8
B2
B
38 54Right-handed alpha
Helix 9
B3
B
72 86Right-handed alpha
Helix 10
B4
B
118 123Right-handed alpha
Helix 11
B5
B
140 151Right-handed alpha
Helix 12
B6
B
209 214Right-handed alpha
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There are 6 sheets in PDB entry 1HMP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 17first strand
Strand 2
A
180 183anti-parallel
Strand 3
A
163 167parallel
Strand 4
A
135 136parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
203 208anti-parallel
Strand 3
A
186 189anti-parallel
Strand 4
A
192 194anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 102first strand
Strand 2
A
60 67parallel
Strand 3
A
127 133parallel
Strand 4
A
156 161parallel
Strand 5
A
177 178parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 17first strand
Strand 2
B
180 183parallel
Strand 3
B
163 167parallel
Strand 4
B
135 136parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
203 208anti-parallel
Strand 3
B
186 189anti-parallel
Strand 4
B
192 194anti-parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
91 102first strand
Strand 2
B
60 67parallel
Strand 3
B
127 133parallel
Strand 4
B
156 161parallel
Strand 5
B
177 178parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il