Analysis of interatomic Contacts of Structural Units in PDB entry:
1HMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1HMV entry

There are 8 chains in PDB entry 1HMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1ALA 554
B
 ILE 5TYR 427
C
 PRO 1ALA 554
D
 ILE 5TYR 427
E
 PRO 1ALA 554
F
 ILE 5TYR 427
G
 PRO 1ALA 554
H
 ILE 5TYR 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 88 helices in PDB entry 1HMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
27 44Right-handed alpha
Helix 2
B
A
77 84Right-handed alpha
Helix 3
C
A
155 175Right-handed alpha
Helix 4
D
A
194 211Right-handed alpha
Helix 5
E
A
253 268Right-handed alpha
Helix 6
F
A
276 281Right-handed alpha
Helix 7
G
A
296 311Right-handed alpha
Helix 8
H
A
363 383Right-handed alpha
Helix 9
I
A
394 404Right-handed alpha
Helix 10
J
A
473 488Right-handed alpha
Helix 11
K
A
499 508Right-handed alpha
Helix 12
L
A
515 528Right-handed alpha
Helix 13
M
A
544 552Right-handed alpha
Helix 14
A
B
27 44Right-handed alpha
Helix 15
B
B
77 83Right-handed alpha
Helix 16
C
B
155 175Right-handed alpha
Helix 17
D
B
194 211Right-handed alpha
Helix 18
E
B
253 269Right-handed alpha
Helix 19
F
B
277 284Right-handed alpha
Helix 20
G
B
296 310Right-handed alpha
Helix 21
H
B
363 382Right-handed alpha
Helix 22
I
B
394 406Right-handed alpha
Helix 23
A
C
27 44Right-handed alpha
Helix 24
B
C
77 84Right-handed alpha
Helix 25
C
C
155 175Right-handed alpha
Helix 26
D
C
194 211Right-handed alpha
Helix 27
E
C
253 268Right-handed alpha
Helix 28
F
C
276 281Right-handed alpha
Helix 29
G
C
296 311Right-handed alpha
Helix 30
H
C
363 383Right-handed alpha
Helix 31
I
C
394 404Right-handed alpha
Helix 32
J
C
473 488Right-handed alpha
Helix 33
K
C
499 508Right-handed alpha
Helix 34
L
C
515 528Right-handed alpha
Helix 35
M
C
544 552Right-handed alpha
Helix 36
A
D
27 44Right-handed alpha
Helix 37
B
D
77 83Right-handed alpha
Helix 38
C
D
155 175Right-handed alpha
Helix 39
D
D
194 211Right-handed alpha
Helix 40
E
D
253 269Right-handed alpha
Helix 41
F
D
277 284Right-handed alpha
Helix 42
G
D
296 310Right-handed alpha
Helix 43
H
D
363 382Right-handed alpha
Helix 44
I
D
394 406Right-handed alpha
Helix 45
A
E
27 44Right-handed alpha
Helix 46
B
E
77 84Right-handed alpha
Helix 47
C
E
155 175Right-handed alpha
Helix 48
D
E
194 211Right-handed alpha
Helix 49
E
E
253 268Right-handed alpha
Helix 50
F
E
276 281Right-handed alpha
Helix 51
G
E
296 311Right-handed alpha
Helix 52
H
E
363 383Right-handed alpha
Helix 53
I
E
394 404Right-handed alpha
Helix 54
J
E
473 488Right-handed alpha
Helix 55
K
E
499 508Right-handed alpha
Helix 56
L
E
515 528Right-handed alpha
Helix 57
M
E
544 552Right-handed alpha
Helix 58
A
F
27 44Right-handed alpha
Helix 59
B
F
77 83Right-handed alpha
Helix 60
C
F
155 175Right-handed alpha
Helix 61
D
F
194 211Right-handed alpha
Helix 62
E
F
253 269Right-handed alpha
Helix 63
F
F
277 284Right-handed alpha
Helix 64
G
F
296 310Right-handed alpha
Helix 65
H
F
363 382Right-handed alpha
Helix 66
I
F
394 406Right-handed alpha
Helix 67
A
G
27 44Right-handed alpha
Helix 68
B
G
77 84Right-handed alpha
Helix 69
C
G
155 175Right-handed alpha
Helix 70
D
G
194 211Right-handed alpha
Helix 71
E
G
253 268Right-handed alpha
Helix 72
F
G
276 281Right-handed alpha
Helix 73
G
G
296 311Right-handed alpha
Helix 74
H
G
363 383Right-handed alpha
Helix 75
I
G
394 404Right-handed alpha
Helix 76
J
G
473 488Right-handed alpha
Helix 77
K
G
499 508Right-handed alpha
Helix 78
L
G
515 528Right-handed alpha
Helix 79
M
G
544 552Right-handed alpha
Helix 80
A
H
27 44Right-handed alpha
Helix 81
B
H
77 83Right-handed alpha
Helix 82
C
H
155 175Right-handed alpha
Helix 83
D
H
194 211Right-handed alpha
Helix 84
E
H
253 269Right-handed alpha
Helix 85
F
H
277 284Right-handed alpha
Helix 86
G
H
296 310Right-handed alpha
Helix 87
H
H
363 382Right-handed alpha
Helix 88
I
H
394 406Right-handed alpha
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There are 8 sheets in PDB entry 1HMV. Click on sheet of interest to get list of strands forming it: S1, S2, S3, S4, S5, S6, S7, S8,

There are 18 strands in S1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 111first strand
Strand 2
A
130 133parallel
Strand 3
A
141 147parallel
Strand 4
A
179 183parallel
Strand 5
A
186 190parallel
Strand 6
A
227 229parallel
Strand 7
A
232 234parallel
Strand 8
A
238 242parallel
Strand 9
A
314 316parallel
Strand 10
A
326 333parallel
Strand 11
A
336 344parallel
Strand 12
A
347 356parallel
Strand 13
A
388 391parallel
Strand 14
A
438 447parallel
Strand 15
A
452 459parallel
Strand 16
A
462 471parallel
Strand 17
A
491 497parallel
Strand 18
A
530 536parallel
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There are 13 strands in S2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 49first strand
Strand 2
B
57 65parallel
Strand 3
B
71 76parallel
Strand 4
B
105 112parallel
Strand 5
B
130 132parallel
Strand 6
B
142 144parallel
Strand 7
B
179 183parallel
Strand 8
B
186 190parallel
Strand 9
B
326 332parallel
Strand 10
B
336 344parallel
Strand 11
B
347 356parallel
Strand 12
B
388 391parallel
Strand 13
B
413 417parallel
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There are 18 strands in S3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
105 111first strand
Strand 2
C
130 133parallel
Strand 3
C
141 147parallel
Strand 4
C
179 183parallel
Strand 5
C
186 190parallel
Strand 6
C
227 229parallel
Strand 7
C
232 234parallel
Strand 8
C
238 242parallel
Strand 9
C
314 316parallel
Strand 10
C
326 333parallel
Strand 11
C
336 344parallel
Strand 12
C
347 356parallel
Strand 13
C
388 391parallel
Strand 14
C
438 447parallel
Strand 15
C
452 459parallel
Strand 16
C
462 471parallel
Strand 17
C
491 497parallel
Strand 18
C
530 536parallel
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There are 13 strands in S4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
46 49first strand
Strand 2
D
57 65parallel
Strand 3
D
71 76parallel
Strand 4
D
105 112parallel
Strand 5
D
130 132parallel
Strand 6
D
142 144parallel
Strand 7
D
179 183parallel
Strand 8
D
186 190parallel
Strand 9
D
326 332parallel
Strand 10
D
336 344parallel
Strand 11
D
347 356parallel
Strand 12
D
388 391parallel
Strand 13
D
413 417parallel
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There are 18 strands in S5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
105 111first strand
Strand 2
E
130 133parallel
Strand 3
E
141 147parallel
Strand 4
E
179 183parallel
Strand 5
E
186 190parallel
Strand 6
E
227 229parallel
Strand 7
E
232 234parallel
Strand 8
E
238 242parallel
Strand 9
E
314 316parallel
Strand 10
E
326 333parallel
Strand 11
E
336 344parallel
Strand 12
E
347 356parallel
Strand 13
E
388 391parallel
Strand 14
E
438 447parallel
Strand 15
E
452 459parallel
Strand 16
E
462 471parallel
Strand 17
E
491 497parallel
Strand 18
E
530 536parallel
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There are 13 strands in S6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
46 49first strand
Strand 2
F
57 65parallel
Strand 3
F
71 76parallel
Strand 4
F
105 112parallel
Strand 5
F
130 132parallel
Strand 6
F
142 144parallel
Strand 7
F
179 183parallel
Strand 8
F
186 190parallel
Strand 9
F
326 332parallel
Strand 10
F
336 344parallel
Strand 11
F
347 356parallel
Strand 12
F
388 391parallel
Strand 13
F
413 417parallel
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There are 18 strands in S7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
105 111first strand
Strand 2
G
130 133parallel
Strand 3
G
141 147parallel
Strand 4
G
179 183parallel
Strand 5
G
186 190parallel
Strand 6
G
227 229parallel
Strand 7
G
232 234parallel
Strand 8
G
238 242parallel
Strand 9
G
314 316parallel
Strand 10
G
326 333parallel
Strand 11
G
336 344parallel
Strand 12
G
347 356parallel
Strand 13
G
388 391parallel
Strand 14
G
438 447parallel
Strand 15
G
452 459parallel
Strand 16
G
462 471parallel
Strand 17
G
491 497parallel
Strand 18
G
530 536parallel
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There are 13 strands in S8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
46 49first strand
Strand 2
H
57 65parallel
Strand 3
H
71 76parallel
Strand 4
H
105 112parallel
Strand 5
H
130 132parallel
Strand 6
H
142 144parallel
Strand 7
H
179 183parallel
Strand 8
H
186 190parallel
Strand 9
H
326 332parallel
Strand 10
H
336 344parallel
Strand 11
H
347 356parallel
Strand 12
H
388 391parallel
Strand 13
H
413 417parallel
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