Analysis of interatomic Contacts of Structural Units in PDB entry:
1HMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1HMY entry

There is 1 chain in PDB entry 1HMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1HMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A
A
23 31Right-handed alpha
Helix 2
B
A
43 52Right-handed alpha
Helix 3
C
A
101 110Right-handed alpha
Helix 4
D
A
131 143Right-handed alpha
Helix 5
E
A
276 283Right-handed alpha
Helix 6
F
A
295 304Right-handed alpha
Helix 7
G
A
308 323Right-handed alpha
Helix 8
B1
A
61 63Right-handed alpha
Helix 9
B2
A
66 68Right-handed alpha
Helix 10
B3
A
93 95Right-handed alpha
Helix 11
C1
A
124 126Right-handed alpha
Helix 12
D1
A
155 157Right-handed alpha
Helix 13
D2
A
192 195Right-handed alpha
Helix 14
D3
A
199 202Right-handed alpha
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There are 2 sheets in PDB entry 1HMY. Click on sheet of interest to get list of strands forming it: 1, 2,

There are 6 strands in 1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 17first strand
Strand 2
A
33 40parallel
Strand 3
A
83 87parallel
Strand 4
A
115 120parallel
Strand 5
A
163 171anti-parallel
Strand 6
A
145 154anti-parallel
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There are 5 strands in 2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 210first strand
Strand 2
A
270 273anti-parallel
Strand 3
A
264 267anti-parallel
Strand 4
A
240 244anti-parallel
Strand 5
A
225 232anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il