Analysis of interatomic Contacts of Structural Units in PDB entry:
1HNK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1HNK entry

There is 1 chain in PDB entry 1HNK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PHE 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 1HNK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 24Right-handed alpha
Helix 2
2
A
29 38Right-handed alpha
Helix 3
3
A
50 67Right-handed alpha
Helix 4
4
A
69 73Right-handed 310
Helix 5
5
A
89 99Right-handed alpha
Helix 6
6
A
110 112Right-handed 310
Helix 7
7
A
113 128Right-handed alpha
Helix 8
8
A
218 231Right-handed alpha
Helix 9
9
A
234 238Right-handed 310
Helix 10
10
A
247 258Right-handed alpha
Helix 11
11
A
261 264Right-handed 310
Helix 12
12
A
268 273Right-handed alpha
Helix 13
13
A
275 277Right-handed 310
Helix 14
14
A
278 290Right-handed alpha
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There are 3 sheets in PDB entry 1HNK. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 11first strand
Strand 2
A
160 169anti-parallel
Strand 3
A
133 140anti-parallel
Strand 4
A
75 79parallel
Strand 5
A
105 108parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
41 44anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 181first strand
Strand 2
A
309 316anti-parallel
Strand 3
A
298 303anti-parallel
Strand 4
A
240 243parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il