Analysis of interatomic Contacts of Structural Units in PDB entry:
1HRN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1HRN entry

There are 2 chains in PDB entry 1HRN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2ARG 326
B
 GLY -2ARG 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1HRN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 51Right-handed alpha
Helix 2
2
A
58 60Right-handed 310
Helix 3
3
A
109 114Right-handed alpha
Helix 4
4
A
126 128Right-handed 310
Helix 5
5
A
130 132Right-handed 310
Helix 6
6
A
136 143Right-handed alpha
Helix 7
7
A
172 174Right-handed 310
Helix 8
8
A
225 235Right-handed alpha
Helix 9
9
A
249 254Right-handed alpha
Helix 10
10
A
271 274Right-handed alpha
Helix 11
11
A
303 306Right-handed alpha
Helix 12
12
B
48 52Right-handed alpha
Helix 13
13
B
58 60Right-handed 310
Helix 14
14
B
109 114Right-handed alpha
Helix 15
15
B
126 128Right-handed 310
Helix 16
16
B
130 132Right-handed 310
Helix 17
17
B
136 143Right-handed alpha
Helix 18
18
B
172 174Right-handed 310
Helix 19
19
B
225 235Right-handed alpha
Helix 20
20
B
249 254Right-handed 310
Helix 21
21
B
271 274Right-handed alpha
Helix 22
22
B
303 308Right-handed alpha
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There are 16 sheets in PDB entry 1HRN. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, P, H, I, J, K, L, M, N, O,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
163 167anti-parallel
Strand 3
A
150 155anti-parallel
Strand 4
A
309 314anti-parallel
Strand 5
A
319 324anti-parallel
Strand 6
A
180 183anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
13 15anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 20first strand
Strand 2
A
25 32anti-parallel
Strand 3
A
119 122parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
94 107parallel
Strand 3
A
78 91anti-parallel
Strand 4
A
70 75anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
299 301first strand
Strand 2
A
210 214parallel
Strand 3
A
191 199anti-parallel
Strand 4
A
258 262anti-parallel
Strand 5
A
265 269anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 223first strand
Strand 2
A
286 288parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 248first strand
Strand 2
A
281 283anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
197 199first strand
Strand 2
A
202 205anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
163 167anti-parallel
Strand 3
B
150 155anti-parallel
Strand 4
B
309 314anti-parallel
Strand 5
B
319 324anti-parallel
Strand 6
B
180 183anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 9first strand
Strand 2
B
13 15anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
94 104parallel
Strand 3
B
83 91anti-parallel
Strand 4
B
16 20anti-parallel
Strand 5
B
25 32anti-parallel
Strand 6
B
119 122parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 74first strand
Strand 2
B
79 83anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 194first strand
Strand 2
B
210 214anti-parallel
Strand 3
B
299 301parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
265 269first strand
Strand 2
B
258 262anti-parallel
Strand 3
B
197 199anti-parallel
Strand 4
B
202 205anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 223first strand
Strand 2
B
286 288parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 240first strand
Strand 2
B
244 248anti-parallel
Strand 3
B
281 283anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il