Analysis of interatomic Contacts of Structural Units in PDB entry:
1I00


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1I00 entry

There are 2 chains in PDB entry 1I00 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6THR 306
B
 SER 6THR 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 1I00. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
6 41Right-handed alpha
Helix 2
2
A
80 94Right-handed alpha
Helix 3
3
A
98 103Right-handed alpha
Helix 4
4
A
110 113Right-handed 310
Helix 5
5
A
114 121Right-handed alpha
Helix 6
6
A
134 142Right-handed alpha
Helix 7
7
A
159 171Right-handed alpha
Helix 8
8
A
186 190Right-handed 310
Helix 9
9
A
221 241Right-handed alpha
Helix 10
10
A
260 262Right-handed 310
Helix 11
11
A
263 270Right-handed alpha
Helix 12
12
A
287 291Right-handed 310
Helix 13
13
A
292 294Right-handed 310
Helix 14
14
B
6 44Right-handed alpha
Helix 15
15
B
80 93Right-handed alpha
Helix 16
16
B
97 103Right-handed alpha
Helix 17
17
B
109 114Right-handed alpha
Helix 18
18
B
114 120Right-handed alpha
Helix 19
19
B
134 142Right-handed alpha
Helix 20
20
B
159 171Right-handed alpha
Helix 21
21
B
186 190Right-handed 310
Helix 22
22
B
221 241Right-handed alpha
Helix 23
23
B
261 269Right-handed alpha
Helix 24
24
B
287 291Right-handed 310
Helix 25
25
B
292 294Right-handed 310
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There are 4 sheets in PDB entry 1I00. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
54 66anti-parallel
Strand 3
A
244 258anti-parallel
Strand 4
A
207 218parallel
Strand 5
A
196 204anti-parallel
Strand 6
A
178 180anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 281first strand
Strand 2
A
296 299anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 47first strand
Strand 2
B
55 66anti-parallel
Strand 3
B
244 258anti-parallel
Strand 4
B
207 218parallel
Strand 5
B
196 204anti-parallel
Strand 6
B
178 180anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
278 281first strand
Strand 2
B
296 299anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il