Analysis of interatomic Contacts of Structural Units in PDB entry:
1I0E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1I0E entry

There are 4 chains in PDB entry 1I0E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 8LYS 381
B
 ASN 8LYS 381
C
 ASN 8LYS 381
D
 ASN 8LYS 381
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 1I0E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 20Right-handed alpha
Helix 2
2
A
28 34Right-handed alpha
Helix 3
3
A
35 43Right-handed alpha
Helix 4
4
A
52 63Right-handed alpha
Helix 5
5
A
79 85Right-handed alpha
Helix 6
6
A
85 94Right-handed alpha
Helix 7
7
A
147 165Right-handed alpha
Helix 8
8
A
166 169Right-handed 310
Helix 9
9
A
183 190Right-handed alpha
Helix 10
10
A
245 267Right-handed alpha
Helix 11
11
A
283 287Right-handed 310
Helix 12
12
A
307 315Right-handed alpha
Helix 13
13
A
345 369Right-handed alpha
Helix 14
14
B
15 20Right-handed alpha
Helix 15
15
B
28 34Right-handed alpha
Helix 16
16
B
35 43Right-handed alpha
Helix 17
17
B
52 63Right-handed alpha
Helix 18
18
B
79 85Right-handed alpha
Helix 19
19
B
85 97Right-handed alpha
Helix 20
20
B
147 165Right-handed alpha
Helix 21
21
B
166 169Right-handed 310
Helix 22
22
B
183 190Right-handed alpha
Helix 23
23
B
245 267Right-handed alpha
Helix 24
24
B
283 287Right-handed 310
Helix 25
25
B
307 315Right-handed alpha
Helix 26
26
B
345 369Right-handed alpha
Helix 27
27
C
15 20Right-handed alpha
Helix 28
28
C
28 34Right-handed alpha
Helix 29
29
C
35 43Right-handed alpha
Helix 30
30
C
52 63Right-handed alpha
Helix 31
31
C
79 85Right-handed alpha
Helix 32
32
C
85 97Right-handed alpha
Helix 33
33
C
147 165Right-handed alpha
Helix 34
34
C
166 169Right-handed 310
Helix 35
35
C
183 190Right-handed alpha
Helix 36
36
C
245 267Right-handed alpha
Helix 37
37
C
283 287Right-handed 310
Helix 38
38
C
307 315Right-handed alpha
Helix 39
39
C
345 369Right-handed alpha
Helix 40
40
D
15 20Right-handed alpha
Helix 41
41
D
28 34Right-handed alpha
Helix 42
42
D
35 43Right-handed alpha
Helix 43
43
D
52 63Right-handed alpha
Helix 44
44
D
79 85Right-handed alpha
Helix 45
45
D
85 97Right-handed alpha
Helix 46
46
D
147 165Right-handed alpha
Helix 47
47
D
166 169Right-handed 310
Helix 48
48
D
183 190Right-handed alpha
Helix 49
49
D
245 267Right-handed alpha
Helix 50
50
D
283 287Right-handed 310
Helix 51
51
D
307 315Right-handed alpha
Helix 52
52
D
345 369Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 1I0E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 175first strand
Strand 2
A
216 220anti-parallel
Strand 3
A
226 229anti-parallel
Strand 4
A
235 242anti-parallel
Strand 5
A
126 132anti-parallel
Strand 6
A
292 298anti-parallel
Strand 7
A
333 338anti-parallel
Strand 8
A
317 318anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 274first strand
Strand 2
A
278 279anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 175first strand
Strand 2
B
216 220anti-parallel
Strand 3
B
226 229anti-parallel
Strand 4
B
235 242anti-parallel
Strand 5
B
126 132anti-parallel
Strand 6
B
292 298anti-parallel
Strand 7
B
333 337anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
273 274first strand
Strand 2
B
278 279anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
171 175first strand
Strand 2
C
216 220anti-parallel
Strand 3
C
226 229anti-parallel
Strand 4
C
235 242anti-parallel
Strand 5
C
126 133anti-parallel
Strand 6
C
291 298anti-parallel
Strand 7
C
333 338anti-parallel
Strand 8
C
317 318anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
273 274first strand
Strand 2
C
278 279anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
171 175first strand
Strand 2
D
216 220anti-parallel
Strand 3
D
226 229anti-parallel
Strand 4
D
235 242anti-parallel
Strand 5
D
126 133anti-parallel
Strand 6
D
291 298anti-parallel
Strand 7
D
333 338anti-parallel
Strand 8
D
317 318anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
273 274first strand
Strand 2
D
278 279anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il