Analysis of interatomic Contacts of Structural Units in PDB entry:
1ID5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1ID5 entry

There are 3 chains in PDB entry 1ID5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 GLY 1GLU 14
H
 ILE 16ARG 244
I
 GLN 5ARG 142
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 1ID5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
7 11Right-handed 310
Helix 2
2
L
14 14Right-handed alpha
Helix 3
3
H
55 59Right-handed 310
Helix 4
4
H
125 130Right-handed alpha
Helix 5
5
H
164 172Right-handed alpha
Helix 6
6
H
234 243Right-handed alpha
Helix 7
7
I
6 10Right-handed 310
Helix 8
8
I
32 34Right-handed 310
Helix 9
9
I
101 104Right-handed 310
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There are 5 sheets in PDB entry 1ID5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
20 21first strand
Strand 2
H
156 161anti-parallel
Strand 3
H
135 140anti-parallel
Strand 4
H
198 202anti-parallel
Strand 5
H
207 216anti-parallel
Strand 6
I
70 83anti-parallel
Strand 7
I
115 120parallel
Strand 8
I
20 25anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
180 183first strand
Strand 2
H
226 230anti-parallel
Strand 3
H
207 216anti-parallel
Strand 4
I
70 83anti-parallel
Strand 5
I
53 63anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
30 35first strand
Strand 2
H
39 46anti-parallel
Strand 3
H
51 54anti-parallel
Strand 4
H
104 108anti-parallel
Strand 5
H
81 90anti-parallel
Strand 6
H
64 68anti-parallel
Strand 7
H
30 35anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
94 98first strand
Strand 2
I
36 47anti-parallel
Strand 3
I
106 108anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
94 98first strand
Strand 2
I
36 47anti-parallel
Strand 3
I
124 131anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il