Analysis of interatomic Contacts of Structural Units in PDB entry:
1IDJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1IDJ entry

There are 2 chains in PDB entry 1IDJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1LEU 359
B
 VAL 1LEU 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1IDJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 35Right-handed alpha
Helix 2
2
A
298 306Right-handed 310
Helix 3
3
A
327 332Right-handed 310
Helix 4
4
A
343 353Right-handed alpha
Helix 5
5
B
28 35Right-handed alpha
Helix 6
6
B
298 306Right-handed 310
Helix 7
7
B
327 332Right-handed 310
Helix 8
8
B
343 353Right-handed alpha
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There are 10 sheets in PDB entry 1IDJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 45first strand
Strand 2
A
110 114parallel
Strand 3
A
135 138parallel
Strand 4
A
164 167parallel
Strand 5
A
187 192parallel
Strand 6
A
221 226parallel
Strand 7
A
244 249parallel
Strand 8
A
267 272parallel
Strand 9
A
289 291parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
120 122parallel
Strand 3
A
141 143parallel
Strand 4
A
170 172parallel
Strand 5
A
195 197parallel
Strand 6
A
229 231parallel
Strand 7
A
252 254parallel
Strand 8
A
275 277parallel
Strand 9
A
314 316parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 64first strand
Strand 2
A
90 97anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 106first strand
Strand 2
A
126 129parallel
Strand 3
A
156 159parallel
Strand 4
A
179 181parallel
Strand 5
A
214 216parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 263first strand
Strand 2
A
283 286parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 45first strand
Strand 2
B
110 114parallel
Strand 3
B
135 138parallel
Strand 4
B
164 167parallel
Strand 5
B
187 192parallel
Strand 6
B
221 226parallel
Strand 7
B
244 249parallel
Strand 8
B
267 272parallel
Strand 9
B
289 291parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 50first strand
Strand 2
B
120 122parallel
Strand 3
B
141 143parallel
Strand 4
B
170 172parallel
Strand 5
B
195 197parallel
Strand 6
B
229 231parallel
Strand 7
B
252 254parallel
Strand 8
B
275 277parallel
Strand 9
B
314 316parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 64first strand
Strand 2
B
90 97anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
104 106first strand
Strand 2
B
126 129parallel
Strand 3
B
156 159parallel
Strand 4
B
179 181parallel
Strand 5
B
214 216parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
261 263first strand
Strand 2
B
283 286parallel
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