Analysis of interatomic Contacts of Structural Units in PDB entry:
1II6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1II6 entry

There are 2 chains in PDB entry 1II6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 16VAL 365
B
 GLY 16VAL 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 1II6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 35Right-handed alpha
Helix 2
2
A
77 95Right-handed alpha
Helix 3
3
A
110 116Right-handed alpha
Helix 4
4
A
134 150Right-handed alpha
Helix 5
5
A
206 208Right-handed 310
Helix 6
6
A
209 227Right-handed alpha
Helix 7
7
A
231 235Right-handed 310
Helix 8
8
A
281 305Right-handed alpha
Helix 9
9
A
310 313Right-handed 310
Helix 10
10
A
314 320Right-handed alpha
Helix 11
11
A
320 325Right-handed alpha
Helix 12
12
A
342 357Right-handed alpha
Helix 13
13
B
29 35Right-handed alpha
Helix 14
14
B
77 95Right-handed alpha
Helix 15
15
B
110 116Right-handed alpha
Helix 16
16
B
134 150Right-handed alpha
Helix 17
17
B
208 229Right-handed alpha
Helix 18
18
B
231 235Right-handed 310
Helix 19
19
B
268 272Right-handed 310
Helix 20
20
B
290 304Right-handed alpha
Helix 21
21
B
310 313Right-handed 310
Helix 22
22
B
314 320Right-handed alpha
Helix 23
23
B
342 357Right-handed alpha
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There are 8 sheets in PDB entry 1II6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
19 25parallel
Strand 3
A
330 336parallel
Strand 4
A
98 105parallel
Strand 5
A
255 265parallel
Strand 6
A
236 247anti-parallel
Strand 7
A
153 164anti-parallel
Strand 8
A
167 170anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 72first strand
Strand 2
A
19 25parallel
Strand 3
A
330 336parallel
Strand 4
A
98 105parallel
Strand 5
A
255 265parallel
Strand 6
A
236 247anti-parallel
Strand 7
A
153 164anti-parallel
Strand 8
A
202 204anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
49 53anti-parallel
Strand 3
A
63 67anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
195 197anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
19 25parallel
Strand 3
B
330 336parallel
Strand 4
B
98 105parallel
Strand 5
B
255 265parallel
Strand 6
B
236 247anti-parallel
Strand 7
B
153 164anti-parallel
Strand 8
B
167 170anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
19 25parallel
Strand 3
B
330 336parallel
Strand 4
B
98 105parallel
Strand 5
B
255 265parallel
Strand 6
B
236 247anti-parallel
Strand 7
B
153 164anti-parallel
Strand 8
B
202 204anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 44first strand
Strand 2
B
49 53anti-parallel
Strand 3
B
63 67anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
184 187first strand
Strand 2
B
190 196anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il