Analysis of interatomic Contacts of Structural Units in PDB entry:
1II8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1II8 entry

There are 2 chains in PDB entry 1II8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 195
B
 ARG 709SER 882
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1II8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
35 49Right-handed alpha
Helix 2
2
A
58 63Right-handed alpha
Helix 3
3
A
115 127Right-handed alpha
Helix 4
4
A
128 133Right-handed alpha
Helix 5
5
A
143 147Right-handed 310
Helix 6
6
A
150 161Right-handed alpha
Helix 7
7
A
163 195Right-handed alpha
Helix 8
8
B
709 761Right-handed alpha
Helix 9
9
B
788 792Right-handed 310
Helix 10
10
B
793 814Right-handed alpha
Helix 11
11
B
830 843Right-handed alpha
Helix 12
12
B
844 847Right-handed 310
Helix 13
13
B
856 862Right-handed 310
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There are 3 sheets in PDB entry 1II8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 20first strand
Strand 2
A
2 9anti-parallel
Strand 3
A
69 77anti-parallel
Strand 4
A
80 89anti-parallel
Strand 5
A
95 104anti-parallel
Strand 6
A
107 109anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
B
818 822parallel
Strand 3
B
849 854parallel
Strand 4
A
24 29parallel
Strand 5
B
865 871parallel
Strand 6
B
876 880anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
766 772first strand
Strand 2
B
775 781anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il