Analysis of interatomic Contacts of Structural Units in PDB entry:
1IJ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1IJ6 entry

There is 1 chain in PDB entry 1IJ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 33HIS 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 1IJ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 61Right-handed alpha
Helix 2
2
A
72 114Right-handed alpha
Helix 3
3
A
120 130Right-handed alpha
Helix 4
4
A
149 161Right-handed alpha
Helix 5
5
A
172 182Right-handed alpha
Helix 6
6
A
191 202Right-handed alpha
Helix 7
7
A
205 213Right-handed alpha
Helix 8
8
A
215 223Right-handed alpha
Helix 9
9
A
225 230Right-handed alpha
Helix 10
10
A
238 247Right-handed alpha
Helix 11
11
A
248 250Right-handed 310
Helix 12
12
A
253 265Right-handed alpha
Helix 13
13
A
274 294Right-handed alpha
Helix 14
14
A
304 314Right-handed alpha
Helix 15
15
A
317 321Right-handed 310
Helix 16
16
A
322 322Right-handed 310
Helix 17
17
A
323 332Right-handed alpha
Helix 18
18
A
340 353Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1IJ6. Click on sheet of interest to get list of strands forming it: A, B,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 237first strand
Strand 2
A
272 273anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 303first strand
Strand 2
A
338 339anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il