Analysis of interatomic Contacts of Structural Units in PDB entry:
1IJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1IJB entry

There is 1 chain in PDB entry 1IJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 500ALA 701
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 1IJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
526 543Right-handed alpha
Helix 2
2
A
573 583Right-handed alpha
Helix 3
3
A
593 605Right-handed alpha
Helix 4
4
A
627 631Right-handed 310
Helix 5
5
A
633 644Right-handed alpha
Helix 6
6
A
658 669Right-handed alpha
Helix 7
7
A
679 681Right-handed 310
Helix 8
8
A
682 698Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1IJB.

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 566first strand
Strand 2
A
551 558anti-parallel
Strand 3
A
513 520parallel
Strand 4
A
615 622parallel
Strand 5
A
646 653parallel
Strand 6
A
675 677parallel
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