Analysis of interatomic Contacts of Structural Units in PDB entry:
1IJJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1IJJ entry

There are 2 chains in PDB entry 1IJJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5CYS 374
B
 GLU 404CYS 774
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 1IJJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
54 61Right-handed alpha
Helix 2
2
A
62 65Right-handed 310
Helix 3
3
A
78 94Right-handed alpha
Helix 4
4
A
97 101Right-handed 310
Helix 5
5
A
112 128Right-handed alpha
Helix 6
6
A
137 144Right-handed alpha
Helix 7
7
A
171 175Right-handed 310
Helix 8
8
A
181 193Right-handed alpha
Helix 9
9
A
202 216Right-handed alpha
Helix 10
10
A
252 257Right-handed alpha
Helix 11
11
A
258 262Right-handed 310
Helix 12
12
A
263 268Right-handed 310
Helix 13
13
A
273 284Right-handed alpha
Helix 14
14
A
286 296Right-handed alpha
Helix 15
15
A
301 306Right-handed 310
Helix 16
16
A
308 319Right-handed alpha
Helix 17
17
A
332 336Right-handed 310
Helix 18
18
A
337 348Right-handed alpha
Helix 19
19
A
349 355Right-handed 310
Helix 20
20
A
359 365Right-handed alpha
Helix 21
21
A
366 372Right-handed 310
Helix 22
22
B
461 463Right-handed 310
Helix 23
23
B
478 493Right-handed alpha
Helix 24
24
B
497 501Right-handed 310
Helix 25
25
B
512 528Right-handed alpha
Helix 26
26
B
537 544Right-handed alpha
Helix 27
27
B
571 575Right-handed 310
Helix 28
28
B
581 593Right-handed alpha
Helix 29
29
B
602 616Right-handed alpha
Helix 30
30
B
623 628Right-handed alpha
Helix 31
31
B
655 660Right-handed alpha
Helix 32
32
B
661 662Right-handed 310
Helix 33
33
B
663 668Right-handed 310
Helix 34
34
B
673 685Right-handed alpha
Helix 35
35
B
686 688Right-handed 310
Helix 36
36
B
689 696Right-handed alpha
Helix 37
37
B
701 705Right-handed 310
Helix 38
38
B
708 719Right-handed alpha
Helix 39
39
B
734 736Right-handed 310
Helix 40
40
B
737 748Right-handed alpha
Helix 41
41
B
749 755Right-handed 310
Helix 42
42
B
759 765Right-handed alpha
Helix 43
43
B
766 771Right-handed 310
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There are 9 sheets in PDB entry 1IJJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
16 19anti-parallel
Strand 3
A
8 12anti-parallel
Strand 4
A
103 107parallel
Strand 5
A
131 136parallel
Strand 6
A
357 358anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 37first strand
Strand 2
A
66 68anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
75 76anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
A
160 165anti-parallel
Strand 3
A
150 155anti-parallel
Strand 4
A
297 300parallel
Strand 5
A
329 330parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
249 250anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
429 432first strand
Strand 2
B
416 421anti-parallel
Strand 3
B
408 412anti-parallel
Strand 4
B
503 507parallel
Strand 5
B
531 536parallel
Strand 6
B
757 758anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
435 438first strand
Strand 2
B
465 468anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
471 472first strand
Strand 2
B
475 476anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
576 578first strand
Strand 2
B
560 565anti-parallel
Strand 3
B
550 555anti-parallel
Strand 4
B
697 700parallel
Strand 5
B
729 730parallel
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