Analysis of interatomic Contacts of Structural Units in PDB entry:
1INE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1INE entry

There are 2 chains in PDB entry 1INE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
L
 ALA 2ALA 212
H
 GLU 1ARG 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 1INE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
L
30 34Right-handed 310
Helix 2
2
L
81 85Right-handed 310
Helix 3
3
L
124 130Right-handed alpha
Helix 4
4
L
185 191Right-handed alpha
Helix 5
5
H
28 32Right-handed 310
Helix 6
6
H
74 76Right-handed 310
Helix 7
7
H
87 91Right-handed 310
Helix 8
8
H
98 102Right-handed 310
Helix 9
9
H
156 158Right-handed 310
Helix 10
10
H
186 191Right-handed alpha
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There are 10 sheets in PDB entry 1INE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 5first strand
Strand 2
L
18 24anti-parallel
Strand 3
L
73 77anti-parallel
Strand 4
L
64 68anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
55 56first strand
Strand 2
L
45 51anti-parallel
Strand 3
L
36 41anti-parallel
Strand 4
L
86 93anti-parallel
Strand 5
L
98 100anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
55 56first strand
Strand 2
L
45 51anti-parallel
Strand 3
L
36 41anti-parallel
Strand 4
L
86 93anti-parallel
Strand 5
L
105 108anti-parallel
Strand 6
L
9 12parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
117 121first strand
Strand 2
L
132 142anti-parallel
Strand 3
L
175 184anti-parallel
Strand 4
L
162 164anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
117 121first strand
Strand 2
L
132 142anti-parallel
Strand 3
L
175 184anti-parallel
Strand 4
L
168 169anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
156 157first strand
Strand 2
L
148 153anti-parallel
Strand 3
L
193 200anti-parallel
Strand 4
L
203 210anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
69 73anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
109 112parallel
Strand 3
H
92 97anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
120 124first strand
Strand 2
H
135 145anti-parallel
Strand 3
H
175 184anti-parallel
Strand 4
H
164 170anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
151 154first strand
Strand 2
H
194 199anti-parallel
Strand 3
H
204 209anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il