Analysis of interatomic Contacts of Structural Units in PDB entry:
1IRM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1IRM entry

There are 3 chains in PDB entry 1IRM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ASN 30HIS 225
A
 SER 31THR 222
B
 ASN 30GLU 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 38 helices in PDB entry 1IRM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
C
34 39Right-handed alpha
Helix 2
2
C
46 68Right-handed alpha
Helix 3
3
C
74 78Right-handed 310
Helix 4
4
C
79 84Right-handed alpha
Helix 5
5
C
85 98Right-handed alpha
Helix 6
6
C
100 105Right-handed alpha
Helix 7
7
C
108 125Right-handed alpha
Helix 8
8
C
128 136Right-handed alpha
Helix 9
9
C
136 142Right-handed alpha
Helix 10
10
C
143 147Right-handed 310
Helix 11
11
C
151 155Right-handed 310
Helix 12
12
C
174 184Right-handed alpha
Helix 13
13
C
185 187Right-handed 310
Helix 14
14
C
192 220Right-handed alpha
Helix 15
15
A
31 36Right-handed alpha
Helix 16
16
A
43 68Right-handed alpha
Helix 17
17
A
74 78Right-handed 310
Helix 18
18
A
85 97Right-handed alpha
Helix 19
19
A
100 105Right-handed alpha
Helix 20
20
A
108 125Right-handed alpha
Helix 21
21
A
125 142Right-handed alpha
Helix 22
22
A
144 156Right-handed alpha
Helix 23
23
A
164 168Right-handed 310
Helix 24
24
A
178 188Right-handed alpha
Helix 25
25
A
192 201Right-handed alpha
Helix 26
26
A
201 218Right-handed alpha
Helix 27
27
B
32 36Right-handed 310
Helix 28
28
B
44 63Right-handed alpha
Helix 29
29
B
74 78Right-handed 310
Helix 30
30
B
85 97Right-handed alpha
Helix 31
31
B
110 121Right-handed alpha
Helix 32
32
B
125 128Right-handed 310
Helix 33
33
B
129 140Right-handed alpha
Helix 34
34
B
146 152Right-handed alpha
Helix 35
35
B
164 168Right-handed 310
Helix 36
36
B
178 186Right-handed alpha
Helix 37
37
B
194 206Right-handed alpha
Helix 38
38
B
206 218Right-handed alpha
Back to top of page
There are no sheets in PDB entry 1IRM
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il