Analysis of interatomic Contacts of Structural Units in PDB entry:
1J08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J08 entry

There are 8 chains in PDB entry 1J08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2SER 226
B
 GLY 2SER 226
C
 GLY 2SER 226
D
 GLY 2SER 226
E
 GLY 2SER 226
F
 GLY 2SER 226
G
 GLY 2SER 226
H
 GLY 2SER 226
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 1J08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 16Right-handed alpha
Helix 2
2
A
17 20Right-handed 310
Helix 3
3
A
37 50Right-handed alpha
Helix 4
4
A
64 74Right-handed alpha
Helix 5
5
A
102 117Right-handed alpha
Helix 6
6
A
122 130Right-handed alpha
Helix 7
7
A
148 166Right-handed alpha
Helix 8
8
A
181 187Right-handed alpha
Helix 9
9
A
213 225Right-handed alpha
Helix 10
10
B
5 16Right-handed alpha
Helix 11
11
B
17 20Right-handed 310
Helix 12
12
B
37 50Right-handed alpha
Helix 13
13
B
64 74Right-handed alpha
Helix 14
14
B
102 117Right-handed alpha
Helix 15
15
B
122 130Right-handed alpha
Helix 16
16
B
148 166Right-handed alpha
Helix 17
17
B
181 188Right-handed alpha
Helix 18
18
B
213 226Right-handed alpha
Helix 19
19
C
5 16Right-handed alpha
Helix 20
20
C
17 20Right-handed 310
Helix 21
21
C
37 50Right-handed alpha
Helix 22
22
C
64 74Right-handed alpha
Helix 23
23
C
102 117Right-handed alpha
Helix 24
24
C
122 132Right-handed alpha
Helix 25
25
C
148 166Right-handed alpha
Helix 26
26
C
181 188Right-handed alpha
Helix 27
27
C
213 225Right-handed alpha
Helix 28
28
D
5 16Right-handed alpha
Helix 29
29
D
17 20Right-handed 310
Helix 30
30
D
37 50Right-handed alpha
Helix 31
31
D
64 74Right-handed alpha
Helix 32
32
D
102 117Right-handed alpha
Helix 33
33
D
122 132Right-handed alpha
Helix 34
34
D
148 166Right-handed alpha
Helix 35
35
D
181 188Right-handed alpha
Helix 36
36
D
213 225Right-handed alpha
Helix 37
37
E
5 16Right-handed alpha
Helix 38
38
E
17 20Right-handed 310
Helix 39
39
E
37 51Right-handed alpha
Helix 40
40
E
64 74Right-handed alpha
Helix 41
41
E
102 117Right-handed alpha
Helix 42
42
E
122 132Right-handed alpha
Helix 43
43
E
148 166Right-handed alpha
Helix 44
44
E
181 188Right-handed alpha
Helix 45
45
E
213 225Right-handed alpha
Helix 46
46
F
5 16Right-handed alpha
Helix 47
47
F
17 20Right-handed 310
Helix 48
48
F
37 50Right-handed alpha
Helix 49
49
F
64 74Right-handed alpha
Helix 50
50
F
102 117Right-handed alpha
Helix 51
51
F
122 130Right-handed alpha
Helix 52
52
F
148 166Right-handed alpha
Helix 53
53
F
181 188Right-handed alpha
Helix 54
54
F
213 225Right-handed alpha
Helix 55
55
G
5 16Right-handed alpha
Helix 56
56
G
17 20Right-handed 310
Helix 57
57
G
37 50Right-handed alpha
Helix 58
58
G
64 73Right-handed alpha
Helix 59
59
G
102 117Right-handed alpha
Helix 60
60
G
122 130Right-handed alpha
Helix 61
61
G
148 166Right-handed alpha
Helix 62
62
G
181 188Right-handed alpha
Helix 63
63
G
213 225Right-handed alpha
Helix 64
64
H
5 16Right-handed alpha
Helix 65
65
H
17 20Right-handed 310
Helix 66
66
H
37 50Right-handed alpha
Helix 67
67
H
64 74Right-handed alpha
Helix 68
68
H
102 117Right-handed alpha
Helix 69
69
H
122 130Right-handed alpha
Helix 70
70
H
148 166Right-handed alpha
Helix 71
71
H
181 188Right-handed alpha
Helix 72
72
H
213 225Right-handed alpha
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There are 8 sheets in PDB entry 1J08. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 61first strand
Strand 2
A
24 30parallel
Strand 3
A
81 85anti-parallel
Strand 4
A
93 96anti-parallel
Strand 5
A
171 177parallel
Strand 6
A
136 142parallel
Strand 7
A
195 200anti-parallel
Strand 8
A
203 209anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 61first strand
Strand 2
B
24 30parallel
Strand 3
B
81 86anti-parallel
Strand 4
B
93 96anti-parallel
Strand 5
B
171 177parallel
Strand 6
B
136 142parallel
Strand 7
B
195 200anti-parallel
Strand 8
B
203 209anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
55 61first strand
Strand 2
C
24 30parallel
Strand 3
C
81 86anti-parallel
Strand 4
C
93 96anti-parallel
Strand 5
C
171 177parallel
Strand 6
C
136 142parallel
Strand 7
C
195 200anti-parallel
Strand 8
C
203 209anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
55 61first strand
Strand 2
D
24 30parallel
Strand 3
D
81 86anti-parallel
Strand 4
D
93 96anti-parallel
Strand 5
D
171 177parallel
Strand 6
D
136 142parallel
Strand 7
D
195 200anti-parallel
Strand 8
D
203 209anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
55 61first strand
Strand 2
E
24 30parallel
Strand 3
E
81 86anti-parallel
Strand 4
E
93 96anti-parallel
Strand 5
E
171 177parallel
Strand 6
E
136 142parallel
Strand 7
E
195 200anti-parallel
Strand 8
E
203 209anti-parallel
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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
55 61first strand
Strand 2
F
24 30parallel
Strand 3
F
81 86anti-parallel
Strand 4
F
93 96anti-parallel
Strand 5
F
171 177parallel
Strand 6
F
136 142parallel
Strand 7
F
195 200anti-parallel
Strand 8
F
203 209anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
55 61first strand
Strand 2
G
24 30parallel
Strand 3
G
81 86anti-parallel
Strand 4
G
93 96anti-parallel
Strand 5
G
171 177parallel
Strand 6
G
136 142parallel
Strand 7
G
195 200anti-parallel
Strand 8
G
203 209anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
55 61first strand
Strand 2
H
24 30parallel
Strand 3
H
81 86anti-parallel
Strand 4
H
93 96anti-parallel
Strand 5
H
171 177parallel
Strand 6
H
136 142parallel
Strand 7
H
195 200anti-parallel
Strand 8
H
203 209anti-parallel
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