Analysis of interatomic Contacts of Structural Units in PDB entry:
1J09


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J09 entry

There is 1 chain in PDB entry 1J09 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 468
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1J09. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 32Right-handed alpha
Helix 2
2
A
51 63Right-handed alpha
Helix 3
3
A
81 84Right-handed 310
Helix 4
4
A
85 99Right-handed alpha
Helix 5
5
A
108 120Right-handed alpha
Helix 6
6
A
124 129Right-handed 310
Helix 7
7
A
130 140Right-handed alpha
Helix 8
8
A
171 173Right-handed 310
Helix 9
9
A
186 198Right-handed alpha
Helix 10
10
A
208 211Right-handed 310
Helix 11
11
A
212 224Right-handed alpha
Helix 12
12
A
252 259Right-handed alpha
Helix 13
13
A
262 274Right-handed alpha
Helix 14
14
A
285 293Right-handed alpha
Helix 15
15
A
294 298Right-handed 310
Helix 16
16
A
306 321Right-handed alpha
Helix 17
17
A
323 338Right-handed alpha
Helix 18
18
A
344 356Right-handed alpha
Helix 19
19
A
357 359Right-handed 310
Helix 20
20
A
363 369Right-handed alpha
Helix 21
21
A
370 373Right-handed 310
Helix 22
22
A
380 404Right-handed alpha
Helix 23
23
A
408 424Right-handed alpha
Helix 24
24
A
426 440Right-handed alpha
Helix 25
25
A
446 453Right-handed alpha
Helix 26
26
A
455 468Right-handed alpha
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There are 4 sheets in PDB entry 1J09. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
35 38parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 105first strand
Strand 2
A
145 148anti-parallel
Strand 3
A
177 179anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 160first strand
Strand 2
A
164 169anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 206first strand
Strand 2
A
229 233parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il