Analysis of interatomic Contacts of Structural Units in PDB entry:
1J0A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J0A entry

There are 3 chains in PDB entry 1J0A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 325
B
 MET 1LEU 325
C
 MET 1LEU 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 1J0A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 10Right-handed alpha
Helix 2
2
A
27 35Right-handed alpha
Helix 3
3
A
44 46Right-handed 310
Helix 4
4
A
53 68Right-handed alpha
Helix 5
5
A
81 94Right-handed alpha
Helix 6
6
A
109 118Right-handed alpha
Helix 7
7
A
132 145Right-handed alpha
Helix 8
8
A
155 159Right-handed 310
Helix 9
9
A
160 165Right-handed alpha
Helix 10
10
A
165 178Right-handed alpha
Helix 11
11
A
192 205Right-handed alpha
Helix 12
12
A
222 238Right-handed alpha
Helix 13
13
A
260 275Right-handed alpha
Helix 14
14
A
282 296Right-handed alpha
Helix 15
15
A
310 317Right-handed alpha
Helix 16
16
A
317 323Right-handed alpha
Helix 17
17
B
2 10Right-handed alpha
Helix 18
18
B
27 35Right-handed alpha
Helix 19
19
B
44 46Right-handed 310
Helix 20
20
B
53 69Right-handed alpha
Helix 21
21
B
81 94Right-handed alpha
Helix 22
22
B
109 118Right-handed alpha
Helix 23
23
B
133 146Right-handed alpha
Helix 24
24
B
155 159Right-handed 310
Helix 25
25
B
160 178Right-handed alpha
Helix 26
26
B
192 206Right-handed alpha
Helix 27
27
B
220 239Right-handed alpha
Helix 28
28
B
260 275Right-handed alpha
Helix 29
29
B
282 296Right-handed alpha
Helix 30
30
B
310 317Right-handed alpha
Helix 31
31
B
317 324Right-handed alpha
Helix 32
32
C
2 10Right-handed alpha
Helix 33
33
C
27 33Right-handed alpha
Helix 34
34
C
44 46Right-handed 310
Helix 35
35
C
53 68Right-handed alpha
Helix 36
36
C
81 94Right-handed alpha
Helix 37
37
C
110 118Right-handed alpha
Helix 38
38
C
133 147Right-handed alpha
Helix 39
39
C
155 159Right-handed 310
Helix 40
40
C
164 178Right-handed alpha
Helix 41
41
C
192 206Right-handed alpha
Helix 42
42
C
219 239Right-handed alpha
Helix 43
43
C
260 275Right-handed alpha
Helix 44
44
C
282 296Right-handed alpha
Helix 45
45
C
310 317Right-handed alpha
Helix 46
46
C
317 324Right-handed alpha
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There are 6 sheets in PDB entry 1J0A. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 26first strand
Strand 2
A
37 42anti-parallel
Strand 3
A
302 307parallel
Strand 4
A
184 189parallel
Strand 5
A
210 215parallel
Strand 6
A
247 250parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 125first strand
Strand 2
A
97 103parallel
Strand 3
A
72 76parallel
Strand 4
A
151 154parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 26first strand
Strand 2
B
37 42anti-parallel
Strand 3
B
302 307parallel
Strand 4
B
184 189parallel
Strand 5
B
210 215parallel
Strand 6
B
247 250parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 122first strand
Strand 2
B
97 101parallel
Strand 3
B
72 76parallel
Strand 4
B
151 154parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 26first strand
Strand 2
C
37 42anti-parallel
Strand 3
C
302 307parallel
Strand 4
C
184 189parallel
Strand 5
C
210 215parallel
Strand 6
C
247 250parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
121 125first strand
Strand 2
C
97 103parallel
Strand 3
C
72 78parallel
Strand 4
C
151 154parallel
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