Analysis of interatomic Contacts of Structural Units in PDB entry:
1J0D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1J0D entry

There are 4 chains in PDB entry 1J0D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ALA 341
B
 ALA 1ALA 341
C
 ALA 1ALA 341
D
 ALA 1ALA 341
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 1J0D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 28Right-handed alpha
Helix 2
2
A
40 42Right-handed 310
Helix 3
3
A
49 56Right-handed alpha
Helix 4
4
A
58 65Right-handed alpha
Helix 5
5
A
79 92Right-handed alpha
Helix 6
6
A
106 110Right-handed 310
Helix 7
7
A
116 125Right-handed alpha
Helix 8
8
A
141 154Right-handed alpha
Helix 9
9
A
162 166Right-handed 310
Helix 10
10
A
172 190Right-handed alpha
Helix 11
11
A
203 215Right-handed alpha
Helix 12
12
A
216 217Right-handed 310
Helix 13
13
A
218 220Right-handed 310
Helix 14
14
A
230 250Right-handed alpha
Helix 15
15
A
273 288Right-handed alpha
Helix 16
16
A
295 309Right-handed alpha
Helix 17
17
A
325 336Right-handed 310
Helix 18
18
B
21 28Right-handed alpha
Helix 19
19
B
40 42Right-handed 310
Helix 20
20
B
49 56Right-handed alpha
Helix 21
21
B
58 65Right-handed alpha
Helix 22
22
B
78 92Right-handed alpha
Helix 23
23
B
106 110Right-handed 310
Helix 24
24
B
111 115Right-handed 310
Helix 25
25
B
116 125Right-handed alpha
Helix 26
26
B
143 154Right-handed alpha
Helix 27
27
B
162 166Right-handed 310
Helix 28
28
B
172 190Right-handed alpha
Helix 29
29
B
203 214Right-handed alpha
Helix 30
30
B
215 217Right-handed 310
Helix 31
31
B
218 220Right-handed 310
Helix 32
32
B
230 249Right-handed alpha
Helix 33
33
B
273 288Right-handed alpha
Helix 34
34
B
295 309Right-handed alpha
Helix 35
35
B
325 336Right-handed 310
Helix 36
36
C
21 28Right-handed alpha
Helix 37
37
C
40 42Right-handed 310
Helix 38
38
C
49 56Right-handed alpha
Helix 39
39
C
59 64Right-handed alpha
Helix 40
40
C
78 91Right-handed alpha
Helix 41
41
C
106 110Right-handed 310
Helix 42
42
C
116 125Right-handed alpha
Helix 43
43
C
141 154Right-handed alpha
Helix 44
44
C
162 166Right-handed 310
Helix 45
45
C
173 190Right-handed alpha
Helix 46
46
C
203 215Right-handed alpha
Helix 47
47
C
216 217Right-handed 310
Helix 48
48
C
218 220Right-handed 310
Helix 49
49
C
230 250Right-handed alpha
Helix 50
50
C
273 288Right-handed alpha
Helix 51
51
C
295 309Right-handed alpha
Helix 52
52
C
325 336Right-handed 310
Helix 53
53
D
2 6Right-handed 310
Helix 54
54
D
21 28Right-handed alpha
Helix 55
55
D
40 42Right-handed 310
Helix 56
56
D
49 56Right-handed alpha
Helix 57
57
D
58 65Right-handed alpha
Helix 58
58
D
78 92Right-handed alpha
Helix 59
59
D
106 110Right-handed 310
Helix 60
60
D
116 125Right-handed alpha
Helix 61
61
D
141 154Right-handed alpha
Helix 62
62
D
162 166Right-handed 310
Helix 63
63
D
173 190Right-handed alpha
Helix 64
64
D
203 216Right-handed alpha
Helix 65
65
D
217 217Right-handed 310
Helix 66
66
D
218 220Right-handed 310
Helix 67
67
D
230 250Right-handed alpha
Helix 68
68
D
273 288Right-handed alpha
Helix 69
69
D
295 309Right-handed alpha
Helix 70
70
D
325 336Right-handed 310
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There are 9 sheets in PDB entry 1J0D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
316 322parallel
Strand 4
A
195 200parallel
Strand 5
A
222 226parallel
Strand 6
A
260 261parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 131first strand
Strand 2
A
94 100parallel
Strand 3
A
69 75parallel
Strand 4
A
159 161parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
33 38anti-parallel
Strand 3
B
317 322parallel
Strand 4
B
195 200parallel
Strand 5
B
222 226parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 161first strand
Strand 2
B
69 72parallel
Strand 3
B
94 100parallel
Strand 4
B
74 75parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 161first strand
Strand 2
B
69 72parallel
Strand 3
B
94 100parallel
Strand 4
B
128 130parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 20first strand
Strand 2
C
32 38anti-parallel
Strand 3
C
316 322parallel
Strand 4
C
195 200parallel
Strand 5
C
222 226parallel
Strand 6
C
259 261parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 131first strand
Strand 2
C
94 100parallel
Strand 3
C
69 75parallel
Strand 4
C
158 161parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
18 20first strand
Strand 2
D
32 38anti-parallel
Strand 3
D
316 322parallel
Strand 4
D
195 200parallel
Strand 5
D
222 226parallel
Strand 6
D
259 261parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
128 131first strand
Strand 2
D
94 100parallel
Strand 3
D
69 75parallel
Strand 4
D
158 161parallel
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