Analysis of interatomic Contacts of Structural Units in PDB entry:
1J0E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1J0E entry

There are 8 chains in PDB entry 1J0E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	ASN 50
A	LEU 52	ALA 341
B	ALA 1	ASN 50
B	LEU 52	ALA 341
C	ALA 1	ASN 50
C	LEU 52	ALA 341
D	ALA 1	ASN 50
D	LEU 52	ALA 341

There are 69 helices in PDB entry 1J0E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	21	28	Right-handed alpha
Helix 2	2	A	40	42	Right-handed 310
Helix 3	3	A	49	57	Right-handed alpha
Helix 4	4	A	58	65	Right-handed alpha
Helix 5	5	A	78	92	Right-handed alpha
Helix 6	6	A	116	125	Right-handed alpha
Helix 7	7	A	141	155	Right-handed alpha
Helix 8	8	A	162	166	Right-handed 310
Helix 9	9	A	172	190	Right-handed alpha
Helix 10	10	A	203	215	Right-handed alpha
Helix 11	11	A	216	217	Right-handed 310
Helix 12	12	A	218	220	Right-handed 310
Helix 13	13	A	230	249	Right-handed alpha
Helix 14	14	A	273	288	Right-handed alpha
Helix 15	15	A	295	309	Right-handed alpha
Helix 16	16	A	325	336	Right-handed 310
Helix 17	17	B	2	6	Right-handed 310
Helix 18	18	B	21	28	Right-handed alpha
Helix 19	19	B	40	42	Right-handed 310
Helix 20	20	B	49	56	Right-handed alpha
Helix 21	21	B	58	65	Right-handed alpha
Helix 22	22	B	78	92	Right-handed alpha
Helix 23	23	B	106	110	Right-handed 310
Helix 24	24	B	117	125	Right-handed alpha
Helix 25	25	B	141	154	Right-handed alpha
Helix 26	26	B	162	166	Right-handed 310
Helix 27	27	B	175	190	Right-handed alpha
Helix 28	28	B	203	215	Right-handed alpha
Helix 29	29	B	216	217	Right-handed 310
Helix 30	30	B	218	220	Right-handed 310
Helix 31	31	B	230	250	Right-handed alpha
Helix 32	32	B	273	288	Right-handed alpha
Helix 33	33	B	295	309	Right-handed alpha
Helix 34	34	B	325	336	Right-handed 310
Helix 35	35	C	21	28	Right-handed alpha
Helix 36	36	C	40	42	Right-handed 310
Helix 37	37	C	49	56	Right-handed alpha
Helix 38	38	C	59	65	Right-handed alpha
Helix 39	39	C	78	91	Right-handed alpha
Helix 40	40	C	106	110	Right-handed 310
Helix 41	41	C	116	125	Right-handed alpha
Helix 42	42	C	141	154	Right-handed alpha
Helix 43	43	C	162	166	Right-handed 310
Helix 44	44	C	173	190	Right-handed alpha
Helix 45	45	C	203	215	Right-handed alpha
Helix 46	46	C	216	217	Right-handed 310
Helix 47	47	C	218	220	Right-handed 310
Helix 48	48	C	230	250	Right-handed alpha
Helix 49	49	C	273	288	Right-handed alpha
Helix 50	50	C	295	309	Right-handed alpha
Helix 51	51	C	325	336	Right-handed 310
Helix 52	52	D	2	6	Right-handed 310
Helix 53	53	D	21	28	Right-handed alpha
Helix 54	54	D	40	42	Right-handed 310
Helix 55	55	D	49	56	Right-handed alpha
Helix 56	56	D	58	65	Right-handed alpha
Helix 57	57	D	79	92	Right-handed alpha
Helix 58	58	D	106	110	Right-handed 310
Helix 59	59	D	116	125	Right-handed alpha
Helix 60	60	D	141	154	Right-handed alpha
Helix 61	61	D	162	166	Right-handed 310
Helix 62	62	D	173	190	Right-handed alpha
Helix 63	63	D	203	215	Right-handed alpha
Helix 64	64	D	216	217	Right-handed 310
Helix 65	65	D	218	220	Right-handed 310
Helix 66	66	D	230	250	Right-handed alpha
Helix 67	67	D	273	288	Right-handed alpha
Helix 68	68	D	295	309	Right-handed alpha
Helix 69	69	D	325	336	Right-handed 310

There are 8 sheets in PDB entry 1J0E. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	20	first strand
Strand 2	A	32	38	anti-parallel
Strand 3	A	316	322	parallel
Strand 4	A	195	200	parallel
Strand 5	A	222	226	parallel
Strand 6	A	260	261	parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	131	first strand
Strand 2	A	94	100	parallel
Strand 3	A	69	75	parallel
Strand 4	A	158	161	parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	20	first strand
Strand 2	B	33	38	anti-parallel
Strand 3	B	317	322	parallel
Strand 4	B	195	200	parallel
Strand 5	B	222	226	parallel
Strand 6	B	260	261	parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	94	99	parallel
Strand 3	B	69	74	parallel
Strand 4	B	158	161	parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	18	20	first strand
Strand 2	C	32	38	anti-parallel
Strand 3	C	316	322	parallel
Strand 4	C	195	200	parallel
Strand 5	C	222	226	parallel
Strand 6	C	259	261	parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	131	first strand
Strand 2	C	94	100	parallel
Strand 3	C	69	75	parallel
Strand 4	C	158	160	parallel

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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	18	20	first strand
Strand 2	D	32	38	anti-parallel
Strand 3	D	316	322	parallel
Strand 4	D	195	200	parallel
Strand 5	D	222	226	parallel
Strand 6	D	259	261	parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	131	first strand
Strand 2	D	94	99	parallel
Strand 3	D	69	74	parallel
Strand 4	D	158	161	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1J0E

Analysis of interatomic Contacts of Structural Units in PDB entry:
1J0E